Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010520g0030 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.3e-70 266.9 135 100.0
Nitab4.5_0001802g0140 Nicotiana tabacum HOM05D003203 ORTHO05D003526 8.9e-32 140.6 153 56.9
Nitab4.5_0002129g0110 Nicotiana tabacum HOM05D003203 ORTHO05D003526 7.6e-31 137.5 153 57.5
Peaxi162Scf00389g00943 Petunia axillaris HOM05D003203 ORTHO05D003526 2.1e-28 129.4 154 53.2
CAN.G352.40 Capsicum annuum HOM05D003203 ORTHO05D003526 1.7e-27 126.3 153 51.6
Sopen11g030070 Solanum pennellii HOM05D003203 ORTHO05D003526 1.4e-24 116.7 152 49.3
Solyc11g072430.3 Solanum lycopersicum HOM05D003203 ORTHO05D003526 5.3e-24 114.8 152 48.7
QL01p037166 Quercus lobata HOM05D003203 ORTHO05D003526 4.8e-17 91.7 119 45.4
Atru.chr3.3693 Acer truncatum HOM05D003203 ORTHO05D003526 9.9e-15 84.0 127 44.1
CSS0047004 Camellia sinensis var. sinensis HOM05D003203 ORTHO05D003526 2.2e-14 82.8 131 42.7
Haze_23916 Corylus avellana HOM05D003203 ORTHO05D003526 3.8e-14 82.0 135 42.2
Cfa011365 Carpinus fangiana HOM05D003203 ORTHO05D003526 6.4e-14 81.3 126 43.7
vmacro14466 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 2.4e-13 79.3 158 38.6
Rhsim01G0220300 Rhododendron simsii HOM05D003203 ORTHO05D003526 4.2e-13 78.6 155 39.4
Ciclev10027702m.g Citrus clementina HOM05D003203 ORTHO05D003526 7.1e-13 77.8 166 36.7
Dinv24673 Davidia involucrata HOM05D003203 ORTHO05D003526 9.3e-13 77.4 103 46.6
Gohir.D05G077500 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.2e-12 77.0 116 45.7
Gorai.009G078900 Gossypium raimondii HOM05D003203 ORTHO05D003526 1.2e-12 77.0 120 45.0
Dinv32789 Davidia involucrata HOM05D003203 ORTHO05D003526 2.1e-12 76.3 134 39.6
Glyma.11G152960 Glycine max HOM05D003203 ORTHO05D003526 2.1e-12 76.3 137 41.6
Sabra16G0090500 Salix brachista HOM05D003203 ORTHO05D003526 4.6e-12 75.1 110 41.8
Cc01_g11550 Coffea canephora HOM05D003203 ORTHO05D003526 6.0e-12 74.7 144 38.2
MSTRG.21144 Avicennia marina HOM05D003203 ORTHO05D003526 7.9e-12 74.3 156 39.7
ECA233G2891 Erigeron canadensis HOM05D003203 ORTHO05D003526 1.0e-11 73.9 110 41.8
Gohir.A07G142600 Gossypium hirsutum HOM05D003203 ORTHO05D003526 1.0e-11 73.9 130 41.5
RcHm_v2.0_Chr5g0060751 Rosa chinensis HOM05D003203 ORTHO05D003526 1.0e-11 73.9 108 39.8
SGA_v2.0_scaffold97G29171 Striga asiatica HOM05D003203 ORTHO05D003526 1.0e-11 73.9 164 35.4
VMungo1127G1096 Vigna mungo HOM05D003203 ORTHO05D003526 2.3e-11 72.8 118 37.3
Ca_19241_v3 Cicer arietinum L. HOM05D003203 ORTHO05D003526 3.0e-11 72.4 107 40.2
ClCG03G002340 Citrullus lanatus HOM05D003203 ORTHO05D003526 3.0e-11 72.4 162 35.8
Lsat_1_v5_gn_6_26241 Lactuca sativa HOM05D003203 ORTHO05D003526 3.0e-11 72.4 156 35.3
Sc15g0001570 Simmondsia chinensis HOM05D003203 ORTHO05D003526 3.0e-11 72.4 156 35.3
DCAR_006042 Daucus carota HOM05D003203 ORTHO05D003526 3.9e-11 72.0 128 39.8
FvH4_3g33360 Fragaria vesca HOM05D003203 ORTHO05D003526 3.9e-11 72.0 51 62.7
FAN11G3892 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-11 72.0 51 62.7
FAN16G3448 Fragaria x ananassa HOM05D003203 ORTHO05D003526 3.9e-11 72.0 51 62.7
TAR636G0568 Trochodendron aralioides HOM05D003203 ORTHO05D003526 3.9e-11 72.0 135 38.5
arahy.Tifrunner.gnm1.ann1.GJ7521 Arachis hypogaea HOM05D003203 ORTHO05D003526 5.1e-11 71.6 54 64.8
Phvul.011G072500 Phaseolus vulgaris HOM05D003203 ORTHO05D003526 5.1e-11 71.6 138 41.3
CANSAT54G1869 Cannabis sativa HOM05D003203 ORTHO05D003526 8.7e-11 70.9 65 55.4
AUR62025015 Chenopodium quinoa HOM05D003203 ORTHO05D003526 8.7e-11 70.9 154 32.5
COL.COLO4_25248 Corchorus olitorius HOM05D003203 ORTHO05D003526 8.7e-11 70.9 119 39.5
HanXRQChr13g0401461 Helianthus annuus HOM05D003203 ORTHO05D003526 8.7e-11 70.9 121 40.5
AUR62006513 Chenopodium quinoa HOM05D003203 ORTHO05D003526 1.1e-10 70.5 94 45.7
Lj2C1036G7 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-10 70.5 40 82.5
Oeu005910.3 Olea europaea HOM05D003203 ORTHO05D003526 1.1e-10 70.5 82 52.4
TAR633G1300 Trochodendron aralioides HOM05D003203 ORTHO05D003526 1.1e-10 70.5 140 38.6
Lj3g0012673 Lotus japonicus HOM05D003203 ORTHO05D003526 1.9e-10 69.7 152 35.5
Lj3g0013082 Lotus japonicus HOM05D003203 ORTHO05D003526 1.9e-10 69.7 47 70.2
Lj3g0020808 Lotus japonicus HOM05D003203 ORTHO05D003526 1.9e-10 69.7 47 70.2
Lalb_Chr03g0027111 Lupinus albus HOM05D003203 ORTHO05D003526 1.9e-10 69.7 51 62.7
Manes.11G141000 Manihot esculenta HOM05D003203 ORTHO05D003526 1.9e-10 69.7 167 34.1
Prupe.6G094700 Prunus persica HOM05D003203 ORTHO05D003526 1.9e-10 69.7 57 59.6
CiPaw.13G106900 Carya illinoinensis HOM05D003203 ORTHO05D003526 2.5e-10 69.3 79 51.9
Psat7g223280 Pisum sativum HOM05D003203 ORTHO05D003526 2.5e-10 69.3 115 41.7
SalBow3G4618 Salvia bowleyana HOM05D003203 ORTHO05D003526 2.5e-10 69.3 80 52.5
Sed0015984 Sechium edule HOM05D003203 ORTHO05D003526 3.3e-10 68.9 131 37.4
THA.LOC104815752 Tarenaya hassleriana HOM05D003203 ORTHO05D003526 3.3e-10 68.9 120 37.5
MELO3C005030.2 Cucumis melo HOM05D003203 ORTHO05D003526 4.3e-10 68.6 162 35.2
CsaV3_1G013020 Cucumis sativus L. HOM05D003203 ORTHO05D003526 4.3e-10 68.6 83 47.0
Migut.D02182 Erythranthe guttata HOM05D003203 ORTHO05D003526 7.4e-10 67.8 146 37.7
Thhalv10006605m.g Eutrema salsugineum HOM05D003203 ORTHO05D003526 7.4e-10 67.8 105 40.0
TPR.G14912 Trifolium pratense HOM05D003203 ORTHO05D003526 7.4e-10 67.8 83 45.8
Lsat_1_v5_gn_8_153961 Lactuca sativa HOM05D003203 ORTHO05D003526 9.6e-10 67.4 152 34.2
Medtr4g060795 Medicago truncatula HOM05D003203 ORTHO05D003526 9.6e-10 67.4 89 47.2
arahy.Tifrunner.gnm1.ann1.DWB64P Arachis hypogaea HOM05D003203 ORTHO05D003526 1.3e-09 67.0 74 48.6
arahy.Tifrunner.gnm1.ann1.VS5L85 Arachis hypogaea HOM05D003203 ORTHO05D003526 1.3e-09 67.0 74 48.6
BcaC07g42504 Brassica carinata HOM05D003203 ORTHO05D003526 1.3e-09 67.0 94 38.3
EL10Ac9g22449 Beta vulgaris HOM05D003203 ORTHO05D003526 1.6e-09 66.6 121 36.4
Cpa.g.sc139.65 Carica papaya HOM05D003203 ORTHO05D003526 1.6e-09 66.6 51 64.7
Lsat_1_v5_gn_9_33601 Lactuca sativa HOM05D003172 ORTHO05D003526 2.1e-09 66.2 155 33.5
MD03G1112400 Malus domestica HOM05D003203 ORTHO05D003526 2.1e-09 66.2 44 68.2
Thecc.09G260300 Theobroma cacao HOM05D003203 ORTHO05D003526 2.1e-09 66.2 105 41.0
TWI31G0332 Tripterygium wilfordii HOM05D003203 ORTHO05D003526 2.1e-09 66.2 44 70.5
Ah.01g014960 Amaranthus hybridus HOM05D003203 ORTHO05D003526 2.8e-09 65.9 66 50.0
Lj1A185G36 Lonicera japonica HOM05D003203 ORTHO05D003526 3.7e-09 65.5 165 33.9
GSVIVG01025133001 Vitis vinifera HOM05D003203 ORTHO05D003526 3.7e-09 65.5 51 64.7
Eucgr.B02467 Eucalyptus grandis HOM05D003203 ORTHO05D003526 6.2e-09 64.7 44 68.2
AT1G07910 Arabidopsis thaliana HOM05D003203 ORTHO05D003526 8.2e-09 64.3 76 46.1
Aa31sc36G120 Aethionema arabicum HOM05D003203 ORTHO05D003526 1.1e-08 63.9 84 45.2
Lj1C185T11 Lonicera japonica HOM05D003203 ORTHO05D003526 1.1e-08 63.9 164 32.9
Carub.0011s0009 Capsella rubella HOM05D003203 ORTHO05D003526 1.4e-08 63.5 76 46.1
AL6G53580 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 2.4e-08 62.8 46 63.0
MD11G1129800 Malus domestica HOM05D003203 ORTHO05D003526 2.4e-08 62.8 162 30.2
PGR102G2647 Punica granatum HOM05D003203 ORTHO05D003526 2.4e-08 62.8 72 52.8
unitig_736.g22420 Utricularia gibba HOM05D003203 ORTHO05D003526 3.1e-08 62.4 67 59.7
CDE07G0291 Ceratophyllum demersum HOM05D003203 ORTHO05D003526 5.3e-08 61.6 48 60.4
HPP92_010183 Vanilla planifolia HOM05D003203 ORTHO05D003526 5.3e-08 61.6 44 63.6
BcaB02g06702 Brassica carinata HOM05D003203 ORTHO05D003526 6.9e-08 61.2 87 44.8
BcaC05g24708 Brassica carinata HOM05D003203 ORTHO05D003526 6.9e-08 61.2 87 44.8
A06p05020 Brassica napus HOM05D003203 ORTHO05D003526 6.9e-08 61.2 92 43.5
BraA06t23708Z Brassica rapa HOM05D003203 ORTHO05D003526 6.9e-08 61.2 92 43.5
Lsat_1_v5_gn_1_45160 Lactuca sativa HOM05D003203 ORTHO05D003526 6.9e-08 61.2 61 54.1
vmacro14070 Vaccinium macrocarpon HOM05D003203 ORTHO05D003526 6.9e-08 61.2 129 38.0
AL1G18200 Arabidopsis lyrata HOM05D003203 ORTHO05D003526 9.0e-08 60.8 75 46.7
Nn2g10680 Nelumbo nucifera HOM05D003203 ORTHO05D003526 9.0e-08 60.8 57 54.4
PSO063G5461 Papaver somniferum HOM05D003203 ORTHO05D003526 2.0e-07 59.7 47 57.4
Carub.0001s0725 Capsella rubella HOM05D003203 ORTHO05D003526 3.4e-07 58.9 76 43.4
MELO3C000359.2 Cucumis melo HOM05D003203 ORTHO05D003526 3.4e-07 58.9 109 38.5
PSO339G5999 Papaver somniferum HOM05D003203 ORTHO05D003526 5.8e-07 58.2 51 52.9
DCAR_024904 Daucus carota HOM05D003203 ORTHO05D003526 1.0e-06 57.4 60 56.7
Aqoxy4G03208 Aquilegia oxysepala HOM05D003203 ORTHO05D003526 1.3e-06 57.0 91 41.8
A09p66110 Brassica napus HOM05D003203 ORTHO05D003526 2.2e-06 56.2 91 37.4
BraA09t41949Z Brassica rapa HOM05D003203 ORTHO05D003526 2.2e-06 56.2 91 37.4
Migut.N02091 Erythranthe guttata HOM05D003203 ORTHO05D003526 2.2e-06 56.2 37 73.0
RcHm_v2.0_Chr4g0389641 Rosa chinensis HOM05D003203 ORTHO05D003526 2.2e-06 56.2 38 65.8
Zm00001eb134270 Zea mays HOM05D003203 ORTHO05D003526 2.9e-06 55.8 44 65.9
Zm00001eb302520 Zea mays HOM05D003203 ORTHO05D003526 2.9e-06 55.8 73 49.3
C05p05960 Brassica napus HOM05D003203 ORTHO05D003526 3.8e-06 55.5 108 38.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.8e-06 55.5 108 38.0
SalBow6G0781 Salvia bowleyana HOM05D003203 ORTHO05D003526 4.9e-06 55.1 44 63.6


User provided reference genes

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