Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006561g0060 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.7e-111 406.0 204 100.0
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-91 339.0 179 95.0
Nitab4.5_0005002g0030 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.1e-77 290.8 189 81.0
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 8.1e-77 290.8 184 80.4
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 2.2e-74 282.7 178 77.5
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 1.1e-73 280.4 178 77.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 2.1e-72 276.2 178 77.0
CAN.G321.27 Capsicum annuum HOM05D000399 ORTHO05D000304 4.6e-72 275.0 178 76.4
Sopen11g017590 Solanum pennellii HOM05D000399 ORTHO05D000304 1.5e-70 270.0 178 75.8
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 2.5e-70 269.2 178 74.2
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.3e-63 246.9 162 74.1
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 2.8e-61 239.2 178 68.0
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.4e-60 236.9 184 64.7
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 3.5e-56 222.2 178 66.9
CSS0017364 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 3.7e-53 212.2 161 65.2
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.8e-52 209.9 178 61.2
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 4.5e-51 205.3 178 59.0
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 1.0e-50 204.1 201 53.2
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 5.5e-49 198.4 178 56.7
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 1.2e-48 197.2 178 56.2
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.1e-48 196.4 125 76.0
CAN.G760.2 Capsicum annuum HOM05D000399 ORTHO05D018858 3.0e-47 192.6 143 67.1
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.0e-47 192.6 184 53.3
Oeu034993.1 Olea europaea HOM05D000399 ORTHO05D000304 3.9e-47 192.2 178 56.2
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.6e-45 186.8 184 50.5
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 2.1e-45 186.4 178 51.7
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 4.8e-45 185.3 178 52.8
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 6.3e-45 184.9 179 50.8
Actinidia03256 Actinidia chinensis HOM05D000399 ORTHO05D000304 8.2e-45 184.5 169 58.0
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 8.2e-45 184.5 184 50.5
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.2e-45 184.5 108 79.6
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.1e-44 184.1 184 50.5
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.4e-44 183.7 184 51.6
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.4e-44 183.7 179 51.4
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 5.3e-44 181.8 183 53.0
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.9e-44 181.4 179 49.7
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.9e-44 181.4 179 50.8
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 9.0e-44 181.0 179 49.7
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 2.6e-43 179.5 184 49.5
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.6e-43 179.5 179 49.7
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 2.6e-43 179.5 184 51.6
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.4e-43 179.1 179 49.7
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 7.6e-43 177.9 184 47.8
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 7.6e-43 177.9 179 50.8
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 7.6e-43 177.9 178 50.0
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.0e-42 177.6 182 48.4
TAR374G0248 Trochodendron aralioides HOM05D000399 ORTHO05D000304 2.9e-42 176.0 178 51.7
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.8e-42 175.6 179 48.6
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 5.0e-42 175.3 187 47.6
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.1e-41 174.1 180 50.0
DCAR_001171 Daucus carota HOM05D000399 ORTHO05D000304 1.4e-41 173.7 178 49.4
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.4e-41 173.7 179 48.6
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.4e-41 173.7 179 48.6
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 3.2e-41 172.6 183 51.4
PGSC0003DMG400007430 Solanum tuberosum HOM05D000399 ORTHO05D000304 3.2e-41 172.6 134 66.4
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.2e-41 172.2 184 48.9
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 4.2e-41 172.2 179 49.2
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 1.2e-40 170.6 179 48.6
DCAR_010108 Daucus carota HOM05D000399 ORTHO05D000304 1.6e-40 170.2 178 48.9
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.6e-40 169.1 178 50.0
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 7.9e-40 167.9 184 50.5
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 1.0e-39 167.5 184 48.4
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.3e-39 167.2 184 47.8
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.8e-39 166.8 187 47.1
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 1.8e-39 166.8 180 47.2
Lsat_1_v5_gn_0_18380 Lactuca sativa HOM05D000399 ORTHO05D000304 3.0e-39 166.0 178 50.6
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.9e-39 165.6 177 46.9
Lsat_1_v5_gn_0_14741 Lactuca sativa HOM05D000399 ORTHO05D000304 6.7e-39 164.9 178 50.6
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 6.7e-39 164.9 178 48.9
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 1.5e-38 163.7 179 45.3
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 2.5e-38 162.9 184 46.7
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 5.7e-38 161.8 184 47.3
Nn4g22024 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.3e-37 160.6 177 49.2
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.6e-37 160.2 184 46.2
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 3.7e-37 159.1 201 45.3
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 1.4e-36 157.1 184 46.2
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.4e-36 157.1 190 47.9
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-36 156.4 190 47.9
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-36 156.4 190 47.9
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 3.1e-36 156.0 184 43.5
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 3.1e-36 156.0 184 46.2
BcaC05g29878 Brassica carinata HOM05D000399 ORTHO05D000304 4.1e-36 155.6 178 43.8
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 4.1e-36 155.6 178 43.8
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 9.0e-36 154.5 178 43.3
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 1.2e-35 154.1 201 43.3
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 1.5e-35 153.7 178 45.5
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 2.6e-35 152.9 201 44.8
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 2.6e-35 152.9 187 43.9
DCAR_006124 Daucus carota HOM05D000399 ORTHO05D000304 3.4e-35 152.5 231 41.1
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 5.9e-35 151.8 178 45.5
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 7.7e-35 151.4 177 42.9
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 7.7e-35 151.4 177 42.9
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 1.7e-34 150.2 179 45.8
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 1.7e-34 150.2 187 43.3
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 2.2e-34 149.8 184 45.7
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 2.2e-34 149.8 178 43.3
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.9e-34 149.4 179 45.8
VMungo0540G2370 Vigna mungo HOM05D000399 ORTHO05D000304 2.9e-34 149.4 201 43.8
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 5.0e-34 148.7 201 44.3
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 6.5e-34 148.3 85 80.0
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.1e-33 147.5 179 44.7
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 1.1e-33 147.5 188 41.5
Psat1g166760 Pisum sativum HOM05D000399 ORTHO05D000304 1.1e-33 147.5 187 44.4
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 1.4e-33 147.1 125 59.2
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 1.9e-33 146.7 184 44.0
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.2e-33 146.0 201 42.8
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 4.2e-33 145.6 184 43.5
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 5.5e-33 145.2 176 47.7
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 7.2e-33 144.8 188 40.4
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 7.2e-33 144.8 175 42.9
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 7.2e-33 144.8 213 40.4
HPP92_020100 Vanilla planifolia HOM05D000399 ORTHO05D000304 7.2e-33 144.8 183 43.2
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.6e-32 143.7 180 43.9
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 2.1e-32 143.3 189 43.9
C05p63500 Brassica napus HOM05D000399 ORTHO05D000304 2.7e-32 142.9 201 38.8
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 2.7e-32 142.9 178 42.7
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 3.6e-32 142.5 178 45.5
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 3.6e-32 142.5 194 43.8
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.6e-32 142.5 178 46.1
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 4.6e-32 142.1 182 46.7
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.4e-31 140.6 189 42.9
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 1.4e-31 140.6 178 42.1
DCAR_012419 Daucus carota HOM05D000399 ORTHO05D000304 3.0e-31 139.4 168 45.8
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 3.9e-31 139.0 201 40.8
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 3.9e-31 139.0 179 41.3
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 8.8e-31 137.9 185 43.8
CDE05G2995 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.1e-30 137.5 205 39.0
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 2.8e-29 132.9 179 42.5
vmacro19579 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.8e-29 132.9 118 56.8
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 1.1e-28 131.0 195 44.1
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 1.8e-28 130.2 178 42.7
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.3e-28 128.6 105 64.8
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 9.1e-28 127.9 178 42.7
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 1.7e-26 123.6 125 48.8
CAN.G295.4 Capsicum annuum HOM05D000399 ORTHO05D018858 1.4e-25 120.6 90 66.7
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 4.2e-25 119.0 151 43.7
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 1.2e-24 117.5 179 39.7
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 7.9e-24 114.8 153 41.2
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.5e-22 110.5 145 42.1
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 1.5e-22 110.5 170 38.8
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.7e-22 108.6 96 53.1
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 9.7e-22 107.8 123 44.7
Zm00001eb219690 Zea mays HOM05D000399 ORTHO05D000304 3.7e-21 105.9 184 37.5
Cpa.g.sc123.45 Carica papaya HOM05D000399 ORTHO05D000304 3.5e-19 99.4 177 35.0
SEGI_04902 Sequoiadendron giganteum HOM05D000399 ORTHO05D000304 2.5e-17 93.2 184 29.9
HanXRQChr05g0161801 Helianthus annuus HOM05D000399 ORTHO05D018858 1.4e-15 87.4 109 47.7
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 3.7e-13 79.3 92 44.6
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.0e-10 71.2 178 30.3
vmacro19546 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.8e-10 69.3 58 56.9
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-09 67.8 71 43.7
VMungo0540G1666 Vigna mungo HOM05D000399 ORTHO05D000304 1.9e-09 67.0 85 47.1
DCAR_032013 Daucus carota HOM05D000399 ORTHO05D000304 8.8e-07 58.2 136 30.9
CSS0047995 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 5.7e-06 55.5 109 32.1
CAN.G560.6 Capsicum annuum HOM05D028266 ORTHO05D018858 7.5e-06 55.1 40 67.5


User provided reference genes

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