Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.0e-96 356.7 175 100.0
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.2e-86 320.5 162 95.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.7e-81 305.4 162 91.4
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 4.1e-77 291.6 163 86.5
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 4.5e-76 288.1 162 85.2
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 2.9e-75 285.4 163 84.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 8.5e-75 283.9 163 84.0
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.1e-74 283.5 163 83.4
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 9.4e-74 280.4 163 82.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.1e-73 277.7 163 82.2
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 6.1e-73 277.7 163 82.2
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.1e-69 266.9 163 77.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 6.7e-64 247.7 163 71.2
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.6e-60 235.7 163 67.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 6.5e-59 231.1 163 68.1
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.1e-58 230.3 165 66.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.2e-58 228.4 163 66.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.5e-58 228.0 162 66.7
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.6e-57 226.5 164 65.2
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.6e-57 225.3 164 65.2
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.7e-57 224.9 162 65.4
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.0e-57 224.2 162 65.4
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-56 223.8 162 65.4
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.8e-56 223.0 163 64.4
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.3e-56 222.6 156 66.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 5.2e-56 221.5 163 63.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 6.8e-56 221.1 163 61.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 6.8e-56 221.1 169 68.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.2e-55 220.3 162 64.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 1.2e-55 220.3 164 65.2
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.5e-55 219.9 163 62.0
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 1.5e-55 219.9 162 66.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.0e-55 219.5 163 65.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.6e-55 219.2 161 65.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 3.4e-55 218.8 163 62.6
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.5e-55 217.6 163 63.8
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.3e-54 216.9 163 60.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.3e-54 216.9 163 62.6
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.7e-54 216.5 163 60.7
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.8e-54 215.7 163 61.3
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.8e-54 215.7 163 62.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.8e-54 214.9 163 62.0
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 6.3e-54 214.5 163 63.2
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 8.3e-54 214.2 163 61.3
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.4e-53 213.4 164 65.2
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.4e-53 213.4 163 61.3
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.8e-53 213.0 163 60.7
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.1e-53 212.2 163 62.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 7.0e-53 211.1 163 62.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.6e-52 209.9 163 59.5
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.7e-52 209.1 162 60.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.7e-52 209.1 163 60.7
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 3.5e-52 208.8 163 62.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 4.5e-52 208.4 164 59.1
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.5e-52 208.4 164 60.4
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.7e-52 207.6 162 61.7
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.0e-51 207.2 165 60.0
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.7e-51 206.5 164 57.9
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.9e-50 203.0 163 58.9
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.5e-50 202.6 162 60.5
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 5.5e-50 201.4 163 60.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.2e-50 201.1 166 57.8
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 9.4e-50 200.7 163 57.1
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.2e-49 200.3 163 58.9
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-49 199.9 163 57.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.1e-49 199.5 163 57.1
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.1e-49 199.5 163 56.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.6e-49 198.7 163 56.4
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 3.6e-49 198.7 163 55.8
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 3.6e-49 198.7 142 66.9
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.7e-49 198.4 162 58.6
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.0e-49 197.6 163 57.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.0e-48 197.2 167 57.5
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-48 197.2 163 57.7
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.0e-48 197.2 164 59.1
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.4e-48 196.8 163 57.7
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.4e-48 196.8 164 54.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.8e-48 196.4 163 60.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.8e-48 196.4 159 57.2
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.3e-48 196.1 163 56.4
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-48 196.1 163 56.4
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.3e-48 196.1 163 58.3
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 3.0e-48 195.7 163 59.5
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.2e-48 194.9 163 56.4
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.2e-48 194.9 163 56.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 8.8e-48 194.1 163 58.9
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 8.8e-48 194.1 163 58.9
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.5e-47 193.4 163 58.3
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.0e-47 193.0 163 53.4
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-47 193.0 169 55.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 2.0e-47 193.0 169 55.6
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.0e-47 193.0 169 55.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.6e-47 192.6 163 58.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 3.4e-47 192.2 163 58.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 3.4e-47 192.2 163 58.3
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.4e-47 192.2 162 57.4
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.4e-47 191.8 163 58.3
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.4e-47 191.8 163 55.8
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.7e-47 191.4 163 57.7
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.5e-47 191.0 163 54.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 9.8e-47 190.7 163 55.2
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 9.8e-47 190.7 163 56.4
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.3e-46 190.3 163 58.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.3e-46 190.3 163 57.1
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.3e-46 190.3 163 55.2
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-46 190.3 173 54.3
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.2e-46 189.5 163 53.4
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.2e-46 189.5 163 57.1
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.8e-46 189.1 164 56.7
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.7e-46 188.7 162 59.3
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.7e-46 188.7 163 55.2
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 4.9e-46 188.3 173 54.9
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.3e-46 188.0 163 54.0
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.3e-46 188.0 163 54.6
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 8.3e-46 187.6 170 54.1
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.1e-45 187.2 163 54.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.1e-45 187.2 173 54.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.4e-45 186.0 175 53.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 4.1e-45 185.3 163 57.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 4.1e-45 185.3 163 57.1
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 4.1e-45 185.3 169 56.2
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.1e-45 185.3 169 56.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 4.1e-45 185.3 173 53.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.4e-45 184.9 163 54.6
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 7.0e-45 184.5 163 51.5
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.0e-45 184.5 176 51.7
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 7.0e-45 184.5 176 51.7
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 9.1e-45 184.1 163 50.9
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 9.1e-45 184.1 141 63.8
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.2e-44 183.7 171 54.4
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.7e-44 182.6 171 54.4
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 4.5e-44 181.8 174 52.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.0e-43 180.6 169 52.1
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.3e-43 179.5 163 52.1
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.9e-43 179.1 170 52.4
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.0e-43 178.3 163 57.7
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.6e-43 177.9 169 50.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 7.2e-42 174.5 162 53.1
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.2e-42 174.5 169 49.1
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 9.5e-42 174.1 185 50.8
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.2e-41 173.7 172 50.6
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 6.1e-41 171.4 162 53.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 8.0e-41 171.0 146 57.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.0e-40 169.1 162 53.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 4.0e-40 168.7 145 55.2
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.2e-40 168.3 145 57.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 5.2e-40 168.3 145 55.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.5e-39 166.8 162 53.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.5e-39 164.5 84 90.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.3e-38 163.7 159 51.6
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.2e-38 162.9 118 68.6
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-37 160.6 167 47.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 1.3e-35 153.7 168 47.0
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 8.6e-35 151.0 135 55.6
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.6e-34 148.3 163 50.9
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 6.2e-33 144.8 168 45.8
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.8e-32 143.3 189 41.3
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 3.1e-32 142.5 163 47.9
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.8e-32 141.4 128 54.7
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-31 139.4 153 47.7
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.7e-30 136.7 142 46.5
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.7e-30 135.6 107 62.6
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.9e-30 135.2 113 56.6
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 4.6e-28 128.6 189 38.6
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.9e-26 123.2 93 63.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.6e-25 119.0 165 40.6
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.7e-22 110.2 91 58.2
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 5.1e-19 98.6 89 57.3
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.6e-19 97.8 96 51.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.8e-17 92.8 79 48.1
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.0e-16 89.0 80 56.2
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 8.4e-14 81.3 54 64.8
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.6e-12 77.0 53 64.2
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.7e-12 76.3 54 63.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.1e-10 70.9 91 35.2
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 2.5e-10 69.7 89 36.0
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 7.3e-10 68.2 72 44.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.1e-08 62.8 53 52.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.2e-07 60.8 99 30.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 4.4e-07 58.9 53 49.1


User provided reference genes

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