Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 9.4e-214 746.9 465 100.0
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 6.6e-167 591.3 480 82.3
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 4.4e-147 525.4 486 69.1
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 4.3e-134 482.3 490 64.1
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 7.6e-131 471.5 485 71.8
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 7.9e-128 461.5 338 73.4
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.6e-125 453.8 482 69.7
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.3e-114 417.5 332 62.7
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 2.5e-113 413.3 339 61.1
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 2.1e-112 410.2 340 62.4
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 7.9e-112 408.3 375 57.6
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 3.0e-111 406.4 331 63.4
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 5.7e-110 402.1 313 64.5
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 4.8e-109 399.1 305 66.2
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 2.0e-107 393.7 337 61.7
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 4.5e-107 392.5 338 61.2
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 1.3e-106 391.0 339 62.2
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 1.7e-106 390.6 337 60.5
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.2e-106 390.2 327 61.8
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 6.5e-106 388.7 332 63.0
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.1e-105 387.9 325 63.7
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 1.1e-105 387.9 256 75.0
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.4e-105 387.5 332 62.7
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 3.2e-105 386.3 337 60.5
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 4.2e-105 386.0 332 61.7
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 5.5e-105 385.6 352 59.7
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 7.2e-105 385.2 320 63.1
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 7.2e-105 385.2 324 63.6
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 9.4e-105 384.8 332 62.7
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.2e-104 384.4 324 63.6
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.2e-104 384.4 325 61.2
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.7e-104 383.3 338 61.8
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.7e-104 383.3 354 59.6
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 6.1e-104 382.1 493 47.1
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 6.1e-104 382.1 332 60.8
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 6.1e-104 382.1 249 73.9
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 3.0e-103 379.8 352 58.0
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 3.9e-103 379.4 324 60.2
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.9e-103 379.4 338 60.9
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.1e-102 377.9 337 59.9
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 4.4e-102 375.9 337 60.8
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 4.4e-102 375.9 338 60.1
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.4e-102 375.9 338 60.1
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.4e-102 375.9 338 60.1
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 5.7e-102 375.6 322 62.4
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 7.4e-102 375.2 329 60.5
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 7.4e-102 375.2 327 62.1
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.3e-101 374.4 322 62.4
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.3e-101 374.4 322 62.4
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.3e-101 374.4 337 60.2
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.2e-101 373.6 341 58.7
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 2.8e-101 373.2 327 61.5
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 2.8e-101 373.2 327 61.5
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 2.8e-101 373.2 322 61.8
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 3.7e-101 372.9 337 59.9
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 4.8e-101 372.5 339 59.3
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 6.3e-101 372.1 322 61.5
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 1.1e-100 371.3 329 61.4
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 2.4e-100 370.2 324 61.1
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.4e-100 370.2 324 61.1
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 4.1e-100 369.4 324 60.5
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 5.3e-100 369.0 322 62.1
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 5.3e-100 369.0 324 61.4
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 7.0e-100 368.6 326 61.7
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 5.9e-99 365.5 336 58.3
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.0e-98 364.8 360 56.7
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 1.7e-98 364.0 337 57.6
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 2.9e-98 363.2 252 72.6
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 6.5e-98 362.1 338 58.3
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 2.5e-97 360.1 409 49.9
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 4.2e-97 359.4 326 59.8
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 2.1e-96 357.1 328 58.5
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 2.7e-96 356.7 280 65.4
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 3.6e-96 356.3 334 57.8
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 4.7e-96 355.9 324 58.6
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 6.1e-96 355.5 320 58.8
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 6.1e-96 355.5 337 57.6
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 1.4e-95 354.4 324 59.6
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.8e-95 354.0 252 69.4
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-95 354.0 324 61.1
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.3e-95 353.6 322 56.5
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 5.7e-94 349.0 337 55.5
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 2.8e-93 346.7 321 54.2
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 1.4e-92 344.4 353 52.7
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.8e-92 344.0 339 56.3
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 3.5e-91 339.7 325 55.4
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 3.5e-91 339.7 322 55.0
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 8.5e-90 335.1 326 54.9
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 4.7e-88 329.3 314 57.6
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.8e-87 327.4 330 53.3
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.0e-87 326.2 336 52.7
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 9.8e-86 321.6 407 47.4
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.7e-85 320.9 259 64.9
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.0e-83 313.9 223 70.9
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.0e-82 309.3 225 70.2
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 4.0e-79 299.7 268 58.6
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.5e-75 286.6 263 57.0
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.9e-73 280.8 336 46.7
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.6e-70 270.4 339 44.8
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 8.3e-69 265.4 338 42.6
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.4e-68 263.8 261 56.3
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 5.4e-68 262.7 327 43.1
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 2.0e-67 260.8 274 54.0
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 7.3e-65 252.3 247 55.5
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.1e-57 228.4 339 40.7
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.2e-56 222.6 231 52.8
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 6.8e-55 219.2 334 40.1
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 2.6e-54 217.2 132 78.8
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 5.8e-54 216.1 268 42.2
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.6e-50 202.2 114 80.7
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.6e-48 198.0 113 82.3
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 4.6e-43 179.9 259 38.2
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 3.9e-42 176.8 203 49.8
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.9e-37 159.8 362 29.8
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.9e-34 150.2 103 65.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 8.7e-34 149.1 101 74.3
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.0e-31 140.2 329 33.7
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 7.6e-30 136.0 91 69.2
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 8.4e-29 132.5 76 80.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.1e-28 132.1 77 77.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 7.1e-28 129.4 77 77.9
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.1e-19 101.3 156 42.3
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 1.3e-16 92.0 76 61.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 2.8e-16 90.9 126 45.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.1e-12 79.0 134 35.8
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 1.4e-12 78.6 54 72.2
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 3.5e-11 73.9 57 61.4
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.3e-09 67.4 116 38.8
BolC4t26141H Brassica oleracea HOM05D035675 ORTHO05D007652 5.3e-07 60.1 60 58.3


User provided reference genes

Program Settings