Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.6e-142 507.3 245 100.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.4e-99 366.7 216 79.6
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 8.5e-97 357.5 216 78.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.9e-96 356.3 216 79.2
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-96 355.1 216 77.8
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 4.2e-96 355.1 216 78.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 3.9e-94 348.6 216 76.9
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-93 347.1 217 77.4
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.1e-93 347.1 217 77.4
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 3.1e-91 339.0 216 75.0
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 6.9e-91 337.8 216 76.4
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.6e-87 326.6 216 72.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.1e-87 326.2 216 72.7
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.7e-87 325.9 216 72.2
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.0e-85 319.7 217 71.0
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.0e-85 319.7 217 71.4
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.6e-85 319.3 216 71.3
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 6.3e-84 314.7 216 70.4
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.1e-83 313.9 213 70.9
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.4e-83 312.8 217 70.0
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.2e-82 310.5 216 68.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.6e-82 309.3 216 68.5
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.9e-81 305.8 217 69.1
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.8e-81 305.4 200 73.0
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 8.5e-81 304.3 216 67.1
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 1.4e-80 303.5 217 69.6
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.2e-80 302.4 220 67.3
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.1e-79 298.1 216 65.3
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 7.9e-79 297.7 216 63.9
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 7.9e-79 297.7 217 66.8
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.0e-78 297.4 217 65.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 2.3e-78 296.2 217 68.7
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.0e-78 295.8 216 65.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.0e-78 295.8 216 67.1
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.9e-78 295.4 216 66.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 5.2e-78 295.0 216 64.8
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 5.2e-78 295.0 216 66.2
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 8.8e-78 294.3 216 65.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.1e-77 293.9 216 62.5
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.0e-77 293.1 216 66.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.6e-77 292.7 216 67.6
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.3e-77 292.4 200 71.0
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.4e-77 291.2 216 66.7
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.7e-77 290.8 216 65.3
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-76 290.4 216 65.3
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.2e-76 289.7 201 69.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 2.8e-76 289.3 214 65.9
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.8e-76 289.3 216 66.7
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.3e-75 285.0 200 70.0
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 9.1e-75 284.3 220 63.6
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 4.5e-74 282.0 216 61.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.0e-73 280.8 216 63.0
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.7e-73 280.0 216 62.5
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.2e-73 279.6 217 63.6
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 6.5e-73 278.1 218 62.8
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.9e-72 276.6 220 61.4
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.5e-72 275.0 216 63.4
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 7.2e-72 274.6 216 63.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.2e-71 273.9 214 63.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.1e-71 273.1 216 64.8
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.7e-71 272.7 216 61.1
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 4.7e-71 271.9 216 63.4
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 6.1e-71 271.6 217 62.2
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.0e-70 269.2 214 61.7
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 4.0e-70 268.9 216 63.4
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 8.8e-70 267.7 230 59.6
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-69 266.5 163 77.3
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.6e-69 266.2 231 61.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.3e-68 263.8 216 58.8
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.7e-68 263.5 216 59.3
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-68 263.1 216 61.6
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-68 262.3 216 58.3
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.7e-68 262.3 216 58.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.7e-68 262.3 200 66.0
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.8e-68 261.9 216 59.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 4.1e-67 258.8 217 59.9
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.1e-67 258.8 216 57.9
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.1e-67 258.8 223 60.1
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.1e-67 258.8 223 60.1
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.3e-67 258.5 216 59.3
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.1e-67 257.7 216 57.4
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-66 257.3 216 59.3
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.6e-66 256.9 215 55.8
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.6e-66 256.9 217 59.4
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.6e-66 256.9 219 57.5
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 2.0e-66 256.5 216 60.6
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.5e-66 255.8 216 58.8
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 3.5e-66 255.8 200 61.5
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.2e-65 253.1 214 57.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.2e-65 253.1 216 57.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.2e-65 253.1 216 58.3
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 5.0e-65 251.9 216 61.1
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.1e-64 250.8 216 56.5
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-64 250.4 223 59.2
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-64 250.0 216 57.9
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.5e-64 249.6 216 57.9
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 3.2e-64 249.2 216 55.6
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.2e-64 248.8 225 58.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.2e-64 248.8 224 58.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 7.2e-64 248.1 225 59.1
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.2e-64 248.1 204 65.7
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.1e-63 246.5 218 57.3
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 2.1e-63 246.5 199 60.8
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.1e-63 246.5 224 58.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.7e-63 246.1 216 56.9
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.7e-63 246.1 224 58.0
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 3.6e-63 245.7 224 57.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.7e-63 245.4 218 56.0
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.7e-63 245.4 218 57.8
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.1e-63 245.0 216 56.9
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 8.0e-63 244.6 218 57.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 8.0e-63 244.6 226 57.1
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.0e-62 244.2 214 55.6
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-62 244.2 225 57.3
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.0e-62 244.2 225 57.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-62 243.8 222 57.7
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-62 243.8 222 57.7
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.4e-62 243.8 218 56.4
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 3.0e-62 242.7 221 57.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 3.0e-62 242.7 218 56.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 4.0e-62 242.3 219 55.7
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 4.0e-62 242.3 218 57.3
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 4.0e-62 242.3 208 58.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.8e-62 241.1 200 58.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.8e-62 241.1 216 57.9
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.2e-61 240.7 216 58.3
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.5e-61 240.4 218 57.3
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-61 240.4 218 56.4
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.5e-61 240.4 218 56.4
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 2.0e-61 240.0 225 56.4
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.6e-61 239.6 198 60.6
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.4e-61 238.8 219 54.8
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.4e-61 238.8 200 60.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 9.8e-61 237.7 220 54.1
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 2.8e-60 236.1 218 55.5
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 2.8e-60 236.1 218 55.5
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 2.8e-60 236.1 223 54.7
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 6.3e-60 235.0 216 56.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.1e-59 232.6 238 53.8
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 5.4e-59 231.9 200 59.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.3e-57 226.5 219 53.9
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 5.0e-57 225.3 216 57.4
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.5e-56 223.8 219 53.4
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 3.2e-56 222.6 223 53.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-56 222.2 138 73.9
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 9.5e-56 221.1 219 53.4
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.8e-55 219.5 216 53.2
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-53 213.0 206 53.9
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.3e-52 210.7 212 50.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 8.3e-52 208.0 219 50.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.6e-50 203.8 185 58.9
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 7.8e-50 201.4 190 53.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.7e-49 200.3 163 60.1
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-47 194.1 218 48.2
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.6e-47 193.7 165 57.0
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.4e-46 190.7 200 53.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.8e-46 190.3 157 60.5
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 5.2e-46 188.7 142 64.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 3.4e-45 186.0 221 48.0
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 2.2e-44 183.3 244 42.6
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-40 171.0 118 72.9
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-38 164.5 162 54.3
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.1e-38 164.5 206 45.6
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 6.8e-38 161.8 241 39.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.3e-33 147.5 108 63.9
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 2.5e-32 143.3 101 69.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-30 137.9 107 64.5
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.7e-26 123.2 107 57.0
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.5e-26 122.9 156 44.2
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.9e-25 119.4 93 62.4
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.3e-24 115.9 108 56.5
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.2e-21 107.8 73 71.2
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 9.9e-21 104.8 88 54.5
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.1e-19 101.3 126 41.3
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 2.3e-17 93.6 89 53.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 3.0e-17 93.2 125 42.4
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 5.1e-17 92.4 174 33.9
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.6e-16 88.2 96 47.9
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 8.1e-15 85.1 80 53.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 7.6e-13 78.6 90 38.9
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 7.1e-11 72.0 54 63.0
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 2.3e-09 67.0 180 27.2
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-08 64.7 79 44.3


User provided reference genes

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