Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 3661.7 1862 100.0
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 3266.5 1870 90.8
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 3063.5 1881 83.1
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 2881.7 1784 82.8
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2177.9 1919 59.7
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2139.8 1918 59.8
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2101.6 1900 58.6
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2094.3 1895 58.7
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2088.9 1923 57.6
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2046.6 1924 56.7
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 2012.3 1891 55.9
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2003.0 1922 55.8
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1991.9 1922 55.3
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1976.4 1928 55.1
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1976.1 1889 55.3
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1971.4 1932 55.0
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1970.7 1931 54.6
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1960.3 1930 54.6
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1958.3 1972 54.3
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1951.0 1923 54.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1936.8 1931 53.7
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1935.2 1944 54.1
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1924.1 1839 55.7
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1915.2 1931 53.3
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1911.3 1921 54.1
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1908.6 1921 53.6
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1904.0 1920 53.9
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1899.4 1942 52.6
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1896.3 1924 53.2
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1895.2 1958 53.1
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1888.6 1902 53.3
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1880.5 1936 52.4
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1876.3 1922 53.2
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1871.3 1772 57.1
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1861.3 1921 52.2
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1858.6 1932 53.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1856.6 1946 52.4
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1856.3 1916 52.6
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1852.8 1898 52.9
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1850.1 1929 53.4
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1849.7 1096 84.4
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1847.0 1928 52.5
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1845.5 1906 52.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1841.6 1918 52.0
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1841.2 1920 52.1
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1836.2 1954 52.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1829.3 1926 51.4
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1826.2 1919 52.2
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1820.8 1946 51.9
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1820.4 1969 51.0
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1818.9 1912 52.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1814.7 1927 51.0
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1812.3 1916 51.6
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1810.8 1913 51.8
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1791.2 1917 50.7
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1790.4 1920 51.9
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1785.4 1941 50.7
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1766.5 2095 48.5
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1762.7 2039 48.8
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1762.3 1934 50.3
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1758.8 1921 50.1
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1758.8 1925 49.8
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1753.8 1866 52.0
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1753.8 1105 81.1
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1752.6 1943 50.2
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1744.9 1924 49.6
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1738.8 1932 49.8
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1738.8 1924 50.2
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1736.1 1936 49.7
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1723.4 1918 49.9
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1718.0 2420 43.0
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1716.4 1918 49.6
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1697.2 1912 49.1
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1686.8 1919 48.8
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1685.2 1911 47.9
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1681.0 1911 47.9
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1679.8 1913 48.9
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1672.5 1906 48.5
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1671.4 1914 48.7
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1666.4 1929 48.4
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1659.0 1907 48.6
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1655.2 1920 48.3
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1646.3 1912 48.1
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1644.4 1915 48.2
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1632.8 1925 47.4
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1628.2 1903 47.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1626.7 1903 47.9
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1626.3 1904 47.8
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1621.3 1917 47.5
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1612.8 1830 48.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1607.8 1912 46.5
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1567.7 1323 60.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1565.8 1973 45.9
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1562.4 1857 46.9
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1561.6 1905 46.8
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1504.2 1937 43.6
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1450.6 1215 60.7
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1437.9 1702 47.4
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1372.8 1950 41.8
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1363.6 1937 41.2
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1357.4 1580 47.0
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1259.6 1948 38.9
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1188.3 752 81.8
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.6e-309 1067.0 1673 39.2
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.7e-298 1030.4 2071 34.0
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 1.9e-297 1026.9 890 60.4
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 5.7e-294 1015.4 2058 34.1
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 2.6e-275 953.4 1994 33.3
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-262 911.4 1099 44.5
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 3.6e-256 889.8 1914 32.7
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 3.4e-182 644.0 907 40.7
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 5.6e-124 450.7 695 39.9
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.2e-71 275.0 256 56.6
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 7.4e-68 264.2 168 78.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 5.0e-56 224.9 557 29.8
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-52 213.8 627 29.2
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.7e-51 209.9 171 64.3
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 2.8e-51 209.1 218 45.0
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-49 203.8 305 44.9
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 1.6e-49 203.4 138 71.7
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.1e-46 193.0 206 45.1
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.4e-34 153.7 218 45.0
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.9e-33 148.3 335 31.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 5.2e-29 135.2 125 56.0
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 3.4e-28 132.5 168 39.9
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 6.3e-27 128.3 209 31.6
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.2e-25 124.0 103 61.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.6e-25 123.6 95 62.1
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 5.2e-21 108.6 82 63.4
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.2e-20 107.5 191 35.1
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 1.7e-16 93.6 81 63.0
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 1.9e-15 90.1 187 29.4
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 8.9e-13 81.3 107 38.3
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 1.3e-11 77.4 127 33.9
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.3e-11 77.4 107 38.3
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 3.9e-08 65.9 84 45.2


User provided reference genes

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