Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 3476.4 1776 100.0
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 3261.9 1870 90.8
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2845.8 1887 78.6
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 2661.7 1790 78.0
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1976.1 1925 56.0
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1946.0 1903 55.8
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1927.1 1924 55.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1889.8 1901 54.5
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1880.9 1929 53.7
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1851.3 1103 84.3
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1842.4 1930 53.0
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1803.5 1897 51.6
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1801.9 1929 51.8
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1788.9 1928 51.3
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1777.7 1936 51.4
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1775.8 1936 51.1
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1775.0 1937 51.1
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1771.1 1936 51.0
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1761.9 1895 50.8
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1759.6 1926 50.8
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1754.6 1978 50.8
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1754.2 1709 56.0
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1747.3 1888 51.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1739.2 1877 51.5
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1738.4 1937 49.9
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1733.8 1950 50.1
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1729.5 1845 51.8
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1715.7 1888 51.1
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1714.5 1937 49.4
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1713.4 1927 49.9
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1709.9 1942 49.1
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1706.8 1948 48.8
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1705.6 1927 49.7
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1704.9 1936 50.1
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1701.0 1926 49.9
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1697.2 1926 49.7
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1690.6 1935 50.1
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1685.6 1912 49.4
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1684.8 1963 49.0
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1682.2 1927 49.5
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1676.8 1960 49.5
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1670.2 1815 51.8
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1661.0 1927 48.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1653.3 1926 48.8
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1652.9 1922 48.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1642.9 1932 47.8
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1637.9 1912 48.5
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1637.1 1938 48.3
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1635.5 1923 48.0
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1625.1 1933 47.3
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1622.1 1920 48.4
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1621.3 1974 47.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1616.3 1925 48.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1615.9 1921 48.2
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1613.2 1922 47.9
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1592.8 1924 46.9
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1589.7 1925 47.1
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1589.3 2076 45.6
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1584.3 1932 46.4
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1578.9 1945 46.6
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1560.8 1329 59.8
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1560.4 2045 45.3
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1558.9 1929 46.9
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1556.2 1930 46.0
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1555.8 1940 46.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1555.0 1872 48.1
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1546.6 1104 74.1
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1539.6 1953 46.3
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1529.6 1935 45.7
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1525.0 1939 45.6
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1521.9 1921 46.3
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1515.0 1924 45.9
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1510.0 2423 39.9
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1497.6 1917 44.5
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1490.3 1917 44.4
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1486.5 1918 45.1
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1478.0 1923 44.9
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1476.5 1919 45.1
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1472.2 1936 44.7
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1466.4 1913 44.8
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1466.1 1919 45.1
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1462.2 1925 44.7
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1461.8 1914 44.9
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1455.7 1740 46.4
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1451.0 1919 44.6
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1446.8 1209 60.9
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1444.1 1915 44.5
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1429.8 1909 44.1
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1428.7 1931 43.7
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1426.0 1922 43.9
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1424.8 1909 44.2
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1423.3 1922 43.1
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1422.5 1909 44.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1372.5 1979 42.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1360.9 1861 43.0
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1354.7 1911 42.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1346.3 1706 45.8
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1297.0 1545 46.9
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1295.8 1957 39.7
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1176.8 1960 38.6
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1162.5 1918 37.6
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1160.6 1942 37.9
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 9.9e-296 1021.1 897 60.0
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 1.2e-290 1004.2 1679 38.3
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.8e-281 973.8 751 70.8
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-261 907.9 1106 44.3
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.3e-252 877.9 2074 31.7
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 3.4e-248 863.2 2049 31.8
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 1.1e-222 778.5 1995 30.7
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 9.5e-206 722.2 1919 29.6
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 7.2e-129 466.8 897 34.3
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 2.3e-90 339.0 660 35.0
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 4.7e-56 224.9 225 45.8
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-52 211.5 627 29.5
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.3e-50 206.8 134 76.9
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 8.7e-50 204.1 138 72.5
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 9.6e-49 200.7 224 43.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 3.2e-44 185.7 214 43.5
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 7.1e-44 184.5 239 47.7
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 3.3e-33 149.1 195 48.2
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 4.5e-30 138.7 168 42.9
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 1.9e-28 133.3 124 55.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 8.7e-26 124.4 95 63.2
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.1e-25 124.0 103 61.2
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 6.3e-24 118.2 394 26.4
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 1.9e-20 106.7 191 34.6
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 2.7e-19 102.8 70 70.0
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 3.9e-18 99.0 64 71.9
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 9.7e-17 94.4 70 64.3
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 3.7e-16 92.4 187 29.9
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 2.0e-14 86.7 137 38.7
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 8.5e-13 81.3 130 36.9
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 2.5e-12 79.7 62 54.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 2.1e-11 76.6 62 53.2
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 3.7e-08 65.9 84 45.2
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 7.7e-06 58.2 32 84.4


User provided reference genes

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