Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.0e-139 498.4 243 100.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.3e-125 450.7 251 88.8
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.4e-120 434.5 245 87.3
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.7e-94 347.4 211 82.9
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.3e-93 344.4 209 82.8
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.8e-91 339.7 243 73.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.9e-86 322.0 245 66.9
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 2.5e-85 319.3 249 65.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.3e-78 297.0 241 61.4
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.8e-78 296.6 246 60.2
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 9.6e-77 290.8 246 59.3
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 1.6e-76 290.0 244 59.8
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.1e-76 289.7 244 62.7
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.7e-76 288.9 237 60.8
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.8e-76 288.5 244 59.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.2e-76 287.7 243 59.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 8.2e-76 287.7 243 59.7
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.4e-75 287.0 242 59.1
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 2.4e-75 286.2 246 59.3
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 4.0e-75 285.4 246 59.8
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.5e-74 282.0 238 60.5
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 7.6e-74 281.2 237 59.9
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.0e-73 280.8 245 57.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.0e-73 280.8 238 57.6
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 1.7e-73 280.0 239 60.7
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.2e-73 279.6 238 58.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-73 279.6 237 59.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.2e-73 279.6 250 57.2
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-73 279.3 243 60.1
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.9e-73 279.3 237 59.1
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 4.9e-73 278.5 249 56.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.9e-73 278.5 238 60.1
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 8.4e-73 277.7 243 55.6
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.4e-72 276.9 240 58.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.9e-72 276.6 246 58.9
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 2.5e-72 276.2 246 55.7
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 5.5e-72 275.0 237 58.2
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 7.1e-72 274.6 237 58.6
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.1e-72 274.6 251 56.6
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.1e-72 274.6 251 56.6
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 9.3e-72 274.2 241 58.1
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.1e-71 273.1 239 59.8
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.5e-71 272.3 238 59.7
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.0e-70 270.8 247 56.7
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 3.0e-70 269.2 237 59.1
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 3.9e-70 268.9 241 56.0
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 6.7e-70 268.1 244 56.1
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.9e-69 266.5 243 57.6
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 7.4e-69 264.6 238 56.3
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 9.7e-69 264.2 238 55.5
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-68 263.8 240 54.2
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.2e-68 263.1 200 66.0
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 2.8e-68 262.7 239 56.9
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.7e-68 262.3 219 61.6
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 8.2e-68 261.2 244 54.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 8.2e-68 261.2 251 55.8
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.8e-67 260.0 246 53.3
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.4e-67 259.6 238 53.4
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.1e-67 259.2 250 52.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 6.9e-67 258.1 244 54.5
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 6.9e-67 258.1 241 57.3
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-66 256.5 247 53.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.4e-66 255.8 246 54.1
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 3.4e-66 255.8 250 55.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.5e-66 255.4 246 54.5
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-66 255.4 246 54.5
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 5.9e-66 255.0 246 53.7
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 7.7e-66 254.6 251 55.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-65 254.2 248 54.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.0e-65 254.2 246 53.7
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.0e-65 254.2 240 53.8
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.8e-65 252.3 246 53.7
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 3.8e-65 252.3 228 57.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.5e-65 251.5 246 53.7
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.4e-64 250.4 246 53.7
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.5e-64 249.6 244 53.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 4.2e-64 248.8 235 55.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 7.2e-64 248.1 246 52.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.2e-63 247.3 245 52.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.6e-63 246.9 232 54.7
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.6e-63 246.9 232 55.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 1.6e-63 246.9 248 52.4
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 2.1e-63 246.5 237 52.3
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-63 246.1 240 52.5
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-63 246.1 240 52.5
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.0e-62 244.2 235 53.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.0e-62 244.2 242 52.5
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 1.4e-62 243.8 250 52.8
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.3e-62 243.0 240 51.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.3e-62 243.0 245 51.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.0e-62 242.7 245 53.5
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.7e-62 241.5 240 51.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 8.8e-62 241.1 240 53.3
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.8e-62 241.1 244 53.3
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 1.5e-61 240.4 250 54.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 2.0e-61 240.0 254 49.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.0e-61 240.0 252 52.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-61 240.0 252 52.4
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 2.0e-61 240.0 245 52.2
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.3e-61 239.2 246 51.2
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 4.3e-61 238.8 247 53.8
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 5.7e-61 238.4 245 52.2
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 7.4e-61 238.0 242 51.7
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 7.4e-61 238.0 244 52.9
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.3e-60 237.3 248 52.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.3e-60 237.3 248 52.0
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.7e-60 236.9 234 50.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.7e-60 236.9 250 51.6
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.8e-60 236.1 244 52.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.8e-60 236.1 204 58.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.2e-60 234.6 191 65.4
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 8.2e-60 234.6 238 50.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.4e-59 233.8 244 51.6
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.4e-59 233.8 237 54.0
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 2.4e-59 233.0 244 50.8
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.4e-59 233.0 246 52.0
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.1e-59 232.6 235 52.3
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 4.1e-59 232.3 247 51.4
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.2e-58 230.7 238 51.3
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.5e-58 230.3 244 50.0
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-58 230.3 246 50.8
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.5e-58 228.8 240 50.0
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.5e-58 228.8 238 51.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.5e-58 228.8 238 51.7
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 5.9e-58 228.4 249 49.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.0e-57 227.6 249 50.2
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.3e-57 227.3 244 50.4
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.7e-57 226.9 244 48.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.2e-57 226.5 243 51.9
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.8e-57 225.7 245 49.4
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 5.0e-57 225.3 244 52.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.5e-57 224.6 240 50.0
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.4e-56 223.8 244 49.6
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.4e-56 223.8 244 49.6
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.2e-55 220.7 244 48.8
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.2e-55 220.7 200 55.5
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 3.6e-55 219.2 235 47.7
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.4e-54 217.2 240 48.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.3e-54 216.5 235 48.9
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 4.4e-53 212.2 229 52.0
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 3.1e-51 206.1 249 48.6
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.1e-51 205.7 214 49.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 7.0e-51 204.9 261 46.0
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 4.5e-50 202.2 239 49.8
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 4.5e-50 202.2 241 50.2
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.3e-49 200.7 239 48.1
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.7e-47 192.2 240 45.8
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 8.0e-47 191.4 195 50.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.9e-46 189.1 102 93.1
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 6.7e-46 188.3 226 46.9
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.7e-46 188.3 162 59.3
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-45 186.4 240 42.9
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 3.3e-45 186.0 250 44.4
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 3.7e-44 182.6 244 44.3
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-43 180.6 157 57.3
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.2e-42 177.6 174 51.7
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.5e-42 176.0 159 56.0
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.2e-40 169.1 192 51.6
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 5.5e-40 168.7 162 53.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-39 167.5 187 51.3
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.8e-38 163.7 275 38.2
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 2.6e-37 159.8 253 40.7
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.0e-34 150.2 272 37.1
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 9.4e-32 141.4 208 41.8
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.1e-31 140.2 123 54.5
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.1e-27 127.9 88 70.5
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.3e-25 120.9 110 54.5
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.5e-24 116.7 108 51.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 5.2e-22 109.0 107 54.2
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-20 104.4 93 54.8
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.7e-20 104.0 102 55.9
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 5.6e-16 89.0 85 56.5
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.1e-15 87.0 166 36.1
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 2.8e-15 86.7 62 64.5
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.8e-15 86.7 125 41.6
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.8e-14 84.0 89 51.7
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.4e-13 79.3 80 53.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 2.9e-12 76.6 190 27.9
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 9.2e-11 71.6 54 63.0
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 1.1e-08 64.7 117 34.2
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 1.1e-08 64.7 101 32.7
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 4.3e-08 62.8 96 40.6


User provided reference genes

Program Settings