Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.1e-120 435.6 211 100.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.8e-109 398.7 209 91.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.9e-106 388.7 209 90.0
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.0e-104 380.6 204 90.7
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-92 343.6 209 82.8
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.0e-82 308.9 206 71.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.3e-81 305.4 205 71.7
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 2.6e-78 295.8 201 70.1
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.5e-75 285.4 203 68.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.6e-75 285.0 200 70.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.0e-75 284.6 203 67.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 6.0e-75 284.6 203 66.0
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.0e-74 283.9 204 67.2
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.3e-74 282.7 203 65.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.0e-74 282.3 212 63.7
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.1e-74 281.6 208 65.4
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.6e-74 281.2 203 66.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 6.6e-74 281.2 204 67.6
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.1e-73 280.4 202 68.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.3e-73 278.5 206 68.0
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 9.6e-73 277.3 203 63.1
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 9.6e-73 277.3 212 63.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.3e-72 276.9 206 65.5
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 2.1e-72 276.2 202 63.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.8e-72 275.8 204 65.7
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.8e-72 275.8 212 63.7
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 4.8e-72 275.0 212 62.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 6.2e-72 274.6 203 64.5
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.4e-71 272.7 206 63.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.4e-71 272.7 206 64.1
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 5.3e-71 271.6 203 67.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 5.3e-71 271.6 197 64.5
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 6.9e-71 271.2 211 62.1
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.0e-70 269.6 209 69.4
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.0e-70 269.6 212 61.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.6e-70 267.7 207 61.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.6e-70 267.7 207 61.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 2.9e-69 265.8 203 66.0
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 2.9e-69 265.8 203 63.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.9e-69 265.0 203 65.5
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 6.4e-69 264.6 204 65.2
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 6.4e-69 264.6 202 62.9
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 8.4e-69 264.2 203 61.1
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 8.4e-69 264.2 205 61.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.4e-68 263.5 203 61.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.4e-68 263.5 204 64.2
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.4e-68 263.5 206 60.7
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 2.4e-68 262.7 203 63.1
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.2e-67 260.4 212 61.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 1.0e-66 257.3 203 62.1
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.3e-66 256.9 204 63.2
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-66 256.5 203 60.1
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 3.0e-66 255.8 203 60.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.6e-66 254.6 171 74.3
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 8.7e-66 254.2 205 61.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.7e-66 254.2 203 60.1
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 8.7e-66 254.2 206 62.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.5e-65 253.4 204 60.3
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 5.6e-65 251.5 204 60.3
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 5.6e-65 251.5 200 62.0
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.3e-64 250.4 205 60.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.6e-64 250.0 205 60.5
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.6e-64 248.8 200 60.5
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.1e-64 247.7 213 59.6
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.1e-64 247.7 213 59.6
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 8.1e-64 247.7 202 57.4
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-63 247.3 201 61.2
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.4e-63 246.9 204 59.8
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.8e-63 246.5 208 57.2
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 1.8e-63 246.5 188 63.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.8e-63 246.5 208 57.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-63 246.1 200 59.5
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-63 246.1 200 59.5
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.4e-63 246.1 216 59.7
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 3.1e-63 245.7 210 60.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 4.0e-63 245.4 207 58.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 6.9e-63 244.6 200 60.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 9.0e-63 244.2 209 57.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.2e-62 243.8 205 59.5
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.5e-62 243.4 208 58.2
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-62 243.4 208 58.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-62 243.0 208 58.7
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.6e-62 242.7 208 58.7
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 2.6e-62 242.7 219 58.0
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 2.6e-62 242.7 204 57.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 2.6e-62 242.7 213 59.2
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.4e-62 242.3 208 57.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 3.4e-62 242.3 203 57.1
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 3.4e-62 242.3 203 62.1
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.8e-62 241.5 208 58.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.3e-61 240.4 206 59.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.7e-61 240.0 200 59.0
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-61 240.0 208 57.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.2e-61 239.6 200 57.5
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.9e-61 239.2 200 59.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.9e-61 239.2 208 57.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.9e-61 239.2 208 56.2
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 4.9e-61 238.4 201 59.7
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 4.9e-61 238.4 203 61.1
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.4e-61 238.0 203 58.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 8.4e-61 237.7 208 57.7
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.9e-60 236.5 205 58.0
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.4e-60 236.1 203 58.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 2.4e-60 236.1 203 58.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 3.2e-60 235.7 201 58.7
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 3.2e-60 235.7 201 58.7
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 4.2e-60 235.3 208 57.7
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 4.2e-60 235.3 211 56.9
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 5.4e-60 235.0 198 60.1
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.4e-60 235.0 200 57.5
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.1e-60 234.6 216 56.0
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 9.3e-60 234.2 201 57.2
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.2e-59 233.8 214 57.0
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.2e-59 233.8 214 57.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.6e-59 233.4 211 56.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 2.1e-59 233.0 198 59.6
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.1e-59 233.0 200 58.0
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 6.0e-59 231.5 211 56.9
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 7.9e-59 231.1 212 56.6
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.8e-58 229.9 203 56.7
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.8e-58 229.9 203 56.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 3.0e-58 229.2 212 57.5
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 6.7e-58 228.0 201 57.2
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 8.7e-58 227.6 210 54.8
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.1e-57 227.3 205 55.6
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.5e-57 226.9 201 58.7
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.5e-57 226.1 200 58.5
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 4.3e-57 225.3 208 53.8
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.3e-57 225.3 212 56.1
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.3e-57 225.3 212 56.1
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.3e-56 223.8 212 54.2
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.1e-56 223.0 208 51.9
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.8e-56 222.6 200 53.0
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.8e-56 222.6 205 56.6
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.8e-55 219.9 202 55.4
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.2e-54 217.2 201 54.7
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.6e-54 216.1 201 53.2
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 3.4e-54 215.7 216 52.3
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 4.5e-54 215.3 211 54.5
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.7e-53 213.4 203 54.7
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.2e-53 213.0 203 55.2
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 2.9e-53 212.6 176 56.2
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 2.5e-52 209.5 211 53.6
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.1e-51 206.5 162 61.7
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.0e-50 202.6 198 51.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 2.5e-49 199.5 157 60.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 4.3e-49 198.7 203 54.7
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.3e-48 197.2 158 58.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 1.6e-48 196.8 162 59.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.1e-47 194.1 203 51.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-47 194.1 107 92.5
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 3.1e-47 192.6 179 52.5
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-46 189.5 196 49.5
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.4e-46 189.1 200 52.5
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.8e-46 188.3 199 48.2
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 7.6e-46 188.0 221 48.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 4.2e-44 182.2 201 47.8
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.5e-44 181.8 126 63.5
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 7.1e-44 181.4 185 54.1
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 7.9e-43 177.9 138 60.9
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.5e-41 173.7 208 47.6
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.6e-40 170.2 207 45.4
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.0e-37 158.7 226 40.3
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.5e-33 147.1 225 39.6
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.8e-32 142.1 95 71.6
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 2.5e-28 129.8 93 61.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 3.9e-26 122.5 95 64.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 1.3e-24 117.5 97 56.7
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.7e-24 117.1 143 44.8
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 3.5e-22 109.4 88 56.8
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-21 107.5 118 50.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 8.0e-19 98.2 74 63.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.0e-18 95.9 93 53.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 3.3e-17 92.8 138 38.4
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.7e-17 91.3 96 47.9
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.2e-16 90.1 115 43.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 3.5e-14 82.8 85 54.1
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 4.2e-12 75.9 77 55.8
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 6.8e-10 68.6 266 23.7
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.5e-09 67.4 61 50.8
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 3.1e-07 59.7 81 40.7


User provided reference genes

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