Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-121 439.9 212 100.0
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.8e-111 404.1 211 92.9
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.4e-108 394.4 211 91.0
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.2e-104 380.9 204 90.7
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.8e-94 347.8 211 82.9
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 3.2e-84 315.5 206 73.8
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 4.2e-84 315.1 205 73.2
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 6.2e-80 301.2 199 70.9
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 3.4e-78 295.4 203 68.0
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 5.8e-78 294.7 203 69.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.3e-77 293.5 200 71.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.9e-77 292.4 203 67.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.9e-77 292.4 202 68.3
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.4e-77 290.8 203 67.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 1.9e-76 289.7 208 66.3
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 5.4e-76 288.1 203 66.5
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 5.4e-76 288.1 202 69.3
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 5.4e-76 288.1 204 67.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 7.1e-76 287.7 206 68.4
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.6e-75 286.6 202 64.9
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 1.6e-75 286.6 200 69.0
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.7e-75 285.8 203 63.5
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.5e-75 285.4 206 66.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 3.5e-75 285.4 204 67.6
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.6e-75 285.0 200 69.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.6e-75 285.0 206 66.5
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 7.9e-75 284.3 200 68.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 3.0e-74 282.3 202 65.3
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 5.1e-74 281.6 200 67.5
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.1e-73 280.4 210 63.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.5e-73 280.0 204 65.7
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.9e-73 279.6 202 66.3
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 7.4e-73 277.7 203 67.0
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-72 276.9 207 63.8
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 1.3e-72 276.9 207 63.8
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.6e-72 276.6 206 63.6
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 2.1e-72 276.2 205 62.0
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.8e-72 275.8 202 65.3
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 3.7e-72 275.4 203 63.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.7e-72 275.4 203 62.6
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.8e-72 275.0 203 65.0
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 5.3e-71 271.6 203 65.5
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 5.3e-71 271.6 203 63.5
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 6.9e-71 271.2 203 65.5
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 9.0e-71 270.8 200 66.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.2e-70 270.4 203 64.5
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.5e-70 270.0 206 61.7
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.4e-70 268.9 211 69.2
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.5e-70 268.5 204 64.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 7.6e-70 267.7 204 64.2
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.0e-69 267.3 199 61.8
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 1.7e-69 266.5 205 63.4
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 2.2e-69 266.2 199 61.3
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.9e-69 265.0 203 60.6
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.4e-69 264.2 199 64.3
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.4e-68 263.5 202 60.4
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 4.2e-68 261.9 204 63.7
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 9.3e-68 260.8 206 62.1
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.2e-67 260.4 213 61.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.2e-67 260.4 213 61.0
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 3.5e-67 258.8 207 60.9
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 6.0e-67 258.1 206 63.1
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.0e-66 257.3 204 60.8
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.0e-66 257.3 205 62.0
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.0e-66 257.3 199 62.3
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.3e-66 256.9 208 58.7
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 1.8e-66 256.5 205 61.0
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 3.9e-66 255.4 209 59.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 6.7e-66 254.6 204 58.8
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.1e-65 253.8 215 61.4
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.1e-65 253.8 213 60.1
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 1.5e-65 253.4 204 59.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 1.5e-65 253.4 208 60.1
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.9e-65 253.1 204 59.8
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.9e-65 253.1 208 60.6
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-65 253.1 208 60.6
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.9e-65 253.1 203 59.1
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.3e-65 252.3 219 59.4
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 4.3e-65 251.9 200 60.5
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.7e-65 251.5 203 64.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 7.4e-65 251.1 208 59.1
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.6e-64 250.0 205 61.0
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-64 250.0 200 60.0
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.6e-64 250.0 200 60.0
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 1.6e-64 250.0 210 60.0
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 2.1e-64 249.6 188 63.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.8e-64 249.2 208 59.6
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.8e-64 249.2 208 59.6
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 4.8e-64 248.4 203 60.1
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.2e-64 248.1 208 59.6
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 8.2e-64 247.7 208 56.2
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 1.4e-63 246.9 205 59.5
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 1.4e-63 246.9 211 58.3
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.4e-63 246.9 204 57.4
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 3.1e-63 245.7 207 60.9
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 5.3e-63 245.0 212 59.0
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 6.9e-63 244.6 208 57.7
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.9e-63 244.6 200 58.0
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 6.9e-63 244.6 211 58.3
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 9.0e-63 244.2 212 59.9
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 1.2e-62 243.8 207 60.4
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 1.2e-62 243.8 216 56.9
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.5e-62 243.4 203 60.6
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.0e-62 243.0 200 59.0
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.0e-62 243.0 200 59.5
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 2.6e-62 242.7 214 58.4
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.6e-62 242.7 214 58.4
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 4.5e-62 241.9 208 58.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 5.8e-62 241.5 211 58.3
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 7.6e-62 241.1 201 58.7
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 7.6e-62 241.1 210 56.7
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-61 240.7 173 70.5
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.3e-61 240.4 199 59.3
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.9e-61 239.2 201 59.7
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 3.8e-61 238.8 200 58.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 6.5e-61 238.0 205 58.5
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.1e-60 237.3 211 58.3
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.4e-60 236.9 203 53.7
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-60 236.9 203 58.6
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 1.4e-60 236.9 203 58.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.4e-60 236.9 212 57.5
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 1.4e-60 236.9 212 57.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.4e-60 236.9 212 56.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.9e-60 236.5 201 58.2
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.9e-60 236.5 201 58.2
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.5e-60 236.1 208 57.2
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 5.5e-60 235.0 201 59.7
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.7e-59 232.6 208 54.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 6.1e-59 231.5 203 57.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 6.1e-59 231.5 203 57.1
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.9e-59 231.1 205 57.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.0e-58 230.7 208 52.9
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 3.0e-58 229.2 201 57.7
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 5.1e-58 228.4 205 56.6
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 6.7e-58 228.0 199 59.3
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 3.3e-57 225.7 204 52.5
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 5.7e-57 224.9 201 56.2
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 2.8e-56 222.6 211 55.5
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 8.2e-56 221.1 211 54.5
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.4e-55 219.5 161 65.2
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.3e-55 218.4 203 55.2
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-54 216.9 203 54.7
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 4.5e-54 215.3 200 57.5
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 8.5e-53 211.1 177 56.5
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.9e-52 209.9 203 52.7
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 7.9e-51 204.5 157 61.1
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.1e-49 200.7 189 52.4
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 3.3e-49 199.1 161 59.6
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 4.3e-49 198.7 158 59.5
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.7e-48 195.7 219 49.3
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 4.8e-48 195.3 203 51.7
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 8.2e-48 194.5 185 55.7
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 8.2e-48 194.5 203 52.7
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 2.4e-47 193.0 200 50.5
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.9e-47 191.4 107 90.7
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 6.9e-47 191.4 205 49.8
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 6.9e-47 191.4 196 50.0
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.2e-46 190.7 200 52.5
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 9.4e-44 181.0 127 65.4
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 1.6e-43 180.3 208 47.6
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.1e-41 174.1 132 62.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 9.7e-41 171.0 203 46.8
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 1.8e-39 166.8 225 42.2
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.5e-36 155.2 221 40.3
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.7e-30 134.8 95 67.4
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 1.3e-29 134.0 152 48.0
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.0e-26 124.4 93 60.2
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.5e-25 120.6 118 52.5
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 4.8e-24 115.5 97 55.7
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.4e-23 114.0 95 60.0
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.2e-21 106.7 88 54.5
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.5e-20 103.2 93 54.8
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.5e-17 94.0 72 63.9
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 2.6e-17 93.2 134 38.8
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 9.8e-17 91.3 96 50.0
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.8e-15 87.0 85 55.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 4.1e-15 85.9 69 56.5
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.6e-14 84.0 144 33.3
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 6.6e-13 78.6 80 52.5
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 8.9e-10 68.2 266 24.4
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 1.2e-09 67.8 54 61.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 4.9e-08 62.4 79 44.3


User provided reference genes

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