Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.2e-105 385.6 274 100.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 6.6e-82 308.1 278 78.4
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 7.3e-81 304.7 159 96.2
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.3e-77 291.2 280 71.1
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 4.1e-76 288.9 261 73.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 6.0e-75 285.0 280 77.1
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.9e-73 280.0 265 74.0
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 2.5e-73 279.6 280 68.9
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 4.3e-73 278.9 293 68.3
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 9.5e-73 277.7 162 86.4
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.2e-72 277.3 280 68.6
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.1e-71 272.7 162 85.8
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 3.1e-71 272.7 162 85.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.2e-70 270.8 163 83.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.2e-70 270.8 166 84.3
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.5e-70 270.4 164 84.8
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.5e-70 270.4 151 90.1
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.0e-70 270.0 162 82.7
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 2.6e-70 269.6 163 85.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.6e-70 269.6 163 82.8
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.6e-70 269.6 163 82.8
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.6e-70 269.6 162 82.7
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 2.6e-70 269.6 161 82.6
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.6e-70 269.6 162 84.0
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 3.4e-70 269.2 161 85.7
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 3.4e-70 269.2 163 84.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.4e-70 268.9 164 82.9
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 4.4e-70 268.9 163 82.2
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 4.4e-70 268.9 163 84.0
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.4e-70 268.9 159 84.3
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 5.8e-70 268.5 165 83.6
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 9.9e-70 267.7 154 89.0
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 9.9e-70 267.7 162 85.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.3e-69 267.3 154 89.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.7e-69 266.9 162 83.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.7e-69 266.9 163 82.2
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.7e-69 266.9 163 82.2
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 2.2e-69 266.5 163 82.2
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 2.9e-69 266.2 162 83.3
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 8.3e-69 264.6 154 88.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 83.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-68 264.2 163 81.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.4e-68 263.8 163 82.8
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.9e-68 263.5 283 66.8
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 1.9e-68 263.5 283 69.6
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 1.9e-68 263.5 163 82.2
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.4e-68 263.1 159 81.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 3.2e-68 262.7 151 89.4
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 3.2e-68 262.7 151 89.4
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 3.2e-68 262.7 162 84.6
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-68 262.7 169 79.9
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.1e-68 262.3 150 87.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 4.1e-68 262.3 164 81.1
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.4e-68 261.9 164 82.9
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 7.1e-68 261.5 161 81.4
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 7.1e-68 261.5 163 81.6
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 7.1e-68 261.5 162 82.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 162 82.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.2e-67 260.8 162 82.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.2e-67 260.8 162 82.1
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.2e-67 260.8 162 82.1
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.2e-67 260.8 150 89.3
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.6e-67 260.4 162 82.7
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.6e-67 260.4 162 82.7
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-67 259.2 157 84.1
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-67 259.2 157 84.1
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 3.5e-67 259.2 150 88.7
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.6e-67 258.8 300 57.3
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.6e-67 258.8 163 80.4
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 7.8e-67 258.1 161 82.0
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 7.8e-67 258.1 161 82.0
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.8e-67 258.1 164 82.3
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.0e-66 257.7 162 81.5
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.3e-66 257.3 162 84.0
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.3e-66 257.3 150 86.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.7e-66 256.9 162 82.1
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.7e-66 256.9 150 87.3
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.0e-66 256.1 161 80.1
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.0e-66 256.1 154 84.4
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.9e-66 255.8 159 79.9
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.1e-66 255.4 166 80.7
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 5.1e-66 255.4 166 80.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 5.1e-66 255.4 150 85.3
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 6.6e-66 255.0 300 58.3
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 6.6e-66 255.0 151 83.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 6.6e-66 255.0 140 91.4
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 8.6e-66 254.6 287 65.5
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 8.6e-66 254.6 300 58.0
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 8.6e-66 254.6 215 64.7
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 1.1e-65 254.2 163 81.0
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.5e-65 253.8 158 81.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 1.5e-65 253.8 151 83.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.9e-65 253.4 151 82.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.9e-65 253.4 230 70.4
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.9e-65 253.4 167 77.8
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 2.5e-65 253.1 151 84.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 3.3e-65 252.7 155 83.9
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.6e-65 251.9 154 82.5
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 5.6e-65 251.9 163 80.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.3e-65 251.5 158 82.3
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.2e-64 250.8 139 90.6
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.1e-64 250.0 153 84.3
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.8e-64 249.6 156 81.4
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 2.8e-64 249.6 145 86.9
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.6e-64 249.2 163 80.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 4.7e-64 248.8 219 63.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.7e-64 248.8 147 83.7
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 6.2e-64 248.4 152 82.9
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 6.2e-64 248.4 165 78.2
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.9e-63 244.6 153 81.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 8.9e-63 244.6 153 81.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 8.9e-63 244.6 161 78.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 8.9e-63 244.6 147 84.4
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.5e-62 243.8 163 79.1
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.5e-62 243.8 163 79.1
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.0e-62 243.4 151 81.5
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-62 243.4 163 78.5
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.0e-62 243.4 163 78.5
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 5.8e-62 241.9 151 84.1
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 7.6e-62 241.5 154 81.8
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 7.6e-62 241.5 149 83.2
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 9.9e-62 241.1 163 77.3
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.3e-61 240.7 163 77.3
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.7e-61 240.4 151 82.1
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.2e-61 240.0 134 88.8
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.1e-60 237.7 147 83.0
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.2e-60 236.1 153 77.1
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-60 236.1 159 77.4
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 7.1e-60 235.0 156 78.2
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.3e-58 229.9 165 74.5
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.3e-57 226.1 158 75.9
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 8.1e-56 221.5 164 72.6
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 2.4e-55 219.9 148 76.4
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 7.6e-54 214.9 130 83.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.8e-53 212.6 161 69.6
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.8e-53 212.6 161 69.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.1e-51 206.8 161 67.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.3e-50 204.1 137 78.8
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.8e-48 195.7 171 64.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-47 194.5 132 78.0
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.1e-47 193.0 132 77.3
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.1e-47 193.0 120 80.0
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.3e-47 192.2 158 64.6
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.4e-46 189.5 151 68.9
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 4.6e-43 179.1 150 62.0
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.3e-42 177.6 164 61.0
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 7.4e-41 171.8 162 61.1
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 9.6e-41 171.4 109 78.0
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.8e-40 169.9 123 70.7
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 7.9e-35 151.8 94 79.8
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 160 50.6
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 160 50.6
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.3e-33 146.4 160 50.6
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 2.1e-32 143.7 103 71.8
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-32 143.7 160 50.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.8e-32 142.5 94 75.5
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 3.4e-30 136.3 136 55.1
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.5e-22 110.9 144 50.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 3.0e-18 96.7 153 42.5
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 4.5e-14 82.8 54 77.8
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 7.7e-14 82.0 55 76.4
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.7e-14 82.0 69 65.2
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 1.7e-13 80.9 52 71.2


User provided reference genes

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