Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02410 Erythranthe guttata HOM05D000917 ORTHO05D000764 2.7e-31 137.9 64 100.0
SalBow6G4640 Salvia bowleyana HOM05D000917 ORTHO05D000764 8.3e-12 73.2 45 73.3
Lj1A262T30 Lonicera japonica HOM05D000917 ORTHO05D000764 9.2e-11 69.7 60 53.3
SGA_v2.0_scaffold22G09790 Striga asiatica HOM05D000917 ORTHO05D000764 2.7e-10 68.2 58 60.3
SalBow6G6826 Salvia bowleyana HOM05D000917 ORTHO05D000764 3.5e-10 67.8 45 66.7
Actinidia24242 Actinidia chinensis HOM05D000917 ORTHO05D000764 7.8e-10 66.6 54 57.4
Migut.D02397 Erythranthe guttata HOM05D000917 ORTHO05D000764 7.8e-10 66.6 54 55.6
CSS0005383 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 1.3e-09 65.9 55 54.5
QL01p011327 Quercus lobata HOM05D000917 ORTHO05D000764 3.9e-09 64.3 47 61.7
Rhsim05G0205200 Rhododendron simsii HOM05D000917 ORTHO05D000764 1.1e-08 62.8 55 56.4
CANSAT54G2535 Cannabis sativa HOM05D000917 ORTHO05D000764 1.9e-08 62.0 46 63.0
Carub.0008s0648 Capsella rubella HOM05D000917 ORTHO05D000764 2.5e-08 61.6 49 65.3
Actinidia24243 Actinidia chinensis HOM05D000917 ORTHO05D000764 3.3e-08 61.2 54 51.9
Haze_23318 Corylus avellana HOM05D000917 ORTHO05D000764 5.6e-08 60.5 65 50.8
ECA240G0735 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.6e-08 60.5 53 49.1
Aqoxy5G01764 Aquilegia oxysepala HOM05D000917 ORTHO05D000764 7.3e-08 60.1 49 65.3
TAR381G0010 Trochodendron aralioides HOM05D000917 ORTHO05D000764 9.5e-08 59.7 45 60.0
AL8G18770 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 1.2e-07 59.3 49 59.2
EL10Ac7g16317 Beta vulgaris HOM05D000917 ORTHO05D000764 1.2e-07 59.3 47 57.4
Haze_23320 Corylus avellana HOM05D000917 ORTHO05D000764 1.2e-07 59.3 54 51.9
Haze_23321 Corylus avellana HOM05D000917 ORTHO05D000764 1.2e-07 59.3 48 56.2
TPR.G5327 Trifolium pratense HOM05D000917 ORTHO05D000764 1.2e-07 59.3 58 50.0
Ah.08g223340 Amaranthus hybridus HOM05D000917 ORTHO05D000764 1.6e-07 58.9 45 55.6
Cfa009950 Carpinus fangiana HOM05D000917 ORTHO05D000764 1.6e-07 58.9 48 56.2
Nn5g29327 Nelumbo nucifera HOM05D000917 ORTHO05D000764 1.6e-07 58.9 48 58.3
Ca_13409_v3 Cicer arietinum L. HOM05D000917 ORTHO05D000764 2.1e-07 58.5 49 55.1
COL.COLO4_22659 Corchorus olitorius HOM05D000917 ORTHO05D000764 2.8e-07 58.2 45 57.8
Dinv31829 Davidia involucrata HOM05D000917 ORTHO05D000764 2.8e-07 58.2 49 57.1
ECA246G2463 Erigeron canadensis HOM05D000917 ORTHO05D000764 2.8e-07 58.2 45 53.3
Eucgr.F01638 Eucalyptus grandis HOM05D000917 ORTHO05D000764 2.8e-07 58.2 39 64.1
Lalb_Chr01g0004981 Lupinus albus HOM05D000917 ORTHO05D000764 2.8e-07 58.2 56 51.8
Nitab4.5_0000192g0070 Nicotiana tabacum HOM05D000917 ORTHO05D000764 2.8e-07 58.2 58 50.0
PSO675G6048 Papaver somniferum HOM05D000917 ORTHO05D000764 2.8e-07 58.2 49 61.2
Peaxi162Scf00438g00049 Petunia axillaris HOM05D000917 ORTHO05D000764 2.8e-07 58.2 58 51.7
SGA_v2.0_scaffold92G28246 Striga asiatica HOM05D000917 ORTHO05D000764 2.8e-07 58.2 49 55.1
arahy.Tifrunner.gnm1.ann1.IGC1S7 Arachis hypogaea HOM05D000917 ORTHO05D000764 3.6e-07 57.8 49 55.1
arahy.Tifrunner.gnm1.ann1.XF1QK2 Arachis hypogaea HOM05D000917 ORTHO05D000764 3.6e-07 57.8 49 55.1
MSTRG.1204 Avicennia marina HOM05D000917 ORTHO05D000764 3.6e-07 57.8 39 66.7
DCAR_006180 Daucus carota HOM05D000917 ORTHO05D000764 3.6e-07 57.8 62 46.8
FvH4_7g18720 Fragaria vesca HOM05D000917 ORTHO05D000764 3.6e-07 57.8 56 51.8
FAN06G4976 Fragaria x ananassa HOM05D000917 ORTHO05D000764 3.6e-07 57.8 56 51.8
FAN10G0837 Fragaria x ananassa HOM05D000917 ORTHO05D000764 3.6e-07 57.8 56 51.8
FAN10G1250 Fragaria x ananassa HOM05D000917 ORTHO05D000764 3.6e-07 57.8 56 51.8
Prupe.1G367600 Prunus persica HOM05D000917 ORTHO05D000764 3.6e-07 57.8 49 57.1
RcHm_v2.0_Chr5g0047601 Rosa chinensis HOM05D000917 ORTHO05D000764 3.6e-07 57.8 55 54.5
MSTRG.25234 Avicennia marina HOM05D000917 ORTHO05D000764 4.7e-07 57.4 48 54.2
CARHR181830 Cardamine hirsuta HOM05D000917 ORTHO05D000764 4.7e-07 57.4 49 59.2
Thhalv10009553m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 4.7e-07 57.4 50 58.0
HanXRQChr03g0092921 Helianthus annuus HOM05D000917 ORTHO05D000764 4.7e-07 57.4 53 47.2
RcHm_v2.0_Chr1g0334231 Rosa chinensis HOM05D000917 ORTHO05D000764 4.7e-07 57.4 55 52.7
Solyc04g081280.3 Solanum lycopersicum HOM05D000917 ORTHO05D000764 4.7e-07 57.4 58 50.0
Solyc12g089280.2 Solanum lycopersicum HOM05D000917 ORTHO05D000764 4.7e-07 57.4 58 51.7
Sopen04g034900 Solanum pennellii HOM05D000917 ORTHO05D000764 4.7e-07 57.4 58 50.0
TPR.G34371 Trifolium pratense HOM05D000917 ORTHO05D000764 4.7e-07 57.4 49 55.1
Migut.C00811 Erythranthe guttata HOM05D000917 ORTHO05D000764 6.2e-07 57.0 58 50.0
MD00G1128400 Malus domestica HOM05D000917 ORTHO05D000764 6.2e-07 57.0 46 54.3
MD11G1172900 Malus domestica HOM05D000917 ORTHO05D000764 6.2e-07 57.0 46 54.3
PGSC0003DMG400003725 Solanum tuberosum HOM05D000917 ORTHO05D000764 6.2e-07 57.0 58 50.0
VMungo0251G2960 Vigna mungo HOM05D000917 ORTHO05D000764 6.2e-07 57.0 39 61.5
Actinidia15410 Actinidia chinensis HOM05D000917 ORTHO05D000764 8.1e-07 56.6 39 59.0
CAN.G1925.7 Capsicum annuum HOM05D000917 ORTHO05D000764 8.1e-07 56.6 39 64.1
Gohir.D05G190300 Gossypium hirsutum HOM05D000917 ORTHO05D000764 8.1e-07 56.6 35 62.9
Gorai.009G195600 Gossypium raimondii HOM05D000917 ORTHO05D000764 8.1e-07 56.6 35 62.9
HanXRQChr14g0430181 Helianthus annuus HOM05D000917 ORTHO05D000764 8.1e-07 56.6 49 53.1
Hma1.2p1_0638F.1_g193730 Hydrangea macrophylla HOM05D000917 ORTHO05D000764 8.1e-07 56.6 45 55.6
Psat6g003680 Pisum sativum HOM05D000917 ORTHO05D000764 8.1e-07 56.6 49 53.1
Prupe.6G141200 Prunus persica HOM05D000917 ORTHO05D000764 8.1e-07 56.6 54 48.1
TAR623G1026 Trochodendron aralioides HOM05D000917 ORTHO05D000764 8.1e-07 56.6 40 57.5
CiPaw.13G131200 Carya illinoinensis HOM05D000917 ORTHO05D000764 1.1e-06 56.2 44 54.5
FAN06G1806 Fragaria x ananassa HOM05D000917 ORTHO05D000764 1.1e-06 56.2 47 55.3
Glyma.14G218000 Glycine max HOM05D000917 ORTHO05D000764 1.1e-06 56.2 39 61.5
Phvul.001G007900 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 1.1e-06 56.2 39 61.5
Sopen12g031150 Solanum pennellii HOM05D000917 ORTHO05D000764 1.1e-06 56.2 39 64.1
TPR.G39537 Trifolium pratense HOM05D000917 ORTHO05D000764 1.1e-06 56.2 56 44.6
VMungo0647G2420 Vigna mungo HOM05D000917 ORTHO05D000764 1.1e-06 56.2 39 61.5
Zm00001eb127930 Zea mays HOM05D000917 ORTHO05D000764 1.1e-06 56.2 49 57.1
C04p25340 Brassica napus HOM05D000917 ORTHO05D000764 1.4e-06 55.8 55 52.7
BolC4t24040H Brassica oleracea HOM05D000917 ORTHO05D000764 1.4e-06 55.8 55 52.7
CAN.G311.9 Capsicum annuum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 58 50.0
AUR62040580 Chenopodium quinoa HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 61.5
MBI17_g22145_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 1.4e-06 55.8 45 51.1
Nn6g32346 Nelumbo nucifera HOM05D000917 ORTHO05D000764 1.4e-06 55.8 49 53.1
Nitab4.5_0001988g0080 Nicotiana tabacum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 58 50.0
Oeu007335.1 Olea europaea HOM05D000917 ORTHO05D000764 1.4e-06 55.8 45 55.6
PSO170G2341 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 49 57.1
PSO478G3549 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 66.7
PSO541G0541 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 66.7
PSO541G1877 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 66.7
PSO675G2904 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 66.7
PSO700G0073 Papaver somniferum HOM05D000917 ORTHO05D000764 1.4e-06 55.8 49 57.1
Phvul.003G280400 Phaseolus vulgaris HOM05D000917 ORTHO05D000764 1.4e-06 55.8 39 61.5
RcHm_v2.0_Chr5g0047791 Rosa chinensis HOM05D000917 ORTHO05D000764 1.4e-06 55.8 55 52.7
Sp1g12700 Schrenkiella parvula HOM05D000917 ORTHO05D000764 1.4e-06 55.8 49 55.1
TAR625G1417 Trochodendron aralioides HOM05D000917 ORTHO05D000764 1.4e-06 55.8 45 57.8
VMungo1127G1162 Vigna mungo HOM05D000917 ORTHO05D000764 1.4e-06 55.8 44 54.5
ATR0577G001 Amborella trichopoda HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 55.6
AL2G35640 Arabidopsis lyrata HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 57.8
AT1G75660 Arabidopsis thaliana HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 57.8
Carub.0002s2249 Capsella rubella HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 57.8
CARHR069050 Cardamine hirsuta HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 57.8
Ciclev10000087m.g Citrus clementina HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 57.8
Glyma.17G257100 Glycine max HOM05D000917 ORTHO05D000764 1.8e-06 55.5 39 61.5
Rhsim06G0022800 Rhododendron simsii HOM05D000917 ORTHO05D000764 1.8e-06 55.5 45 53.3
THA.LOC104809408 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 1.8e-06 55.5 39 64.1
Gohir.A05G187400 Gossypium hirsutum HOM05D000917 ORTHO05D000764 2.3e-06 55.1 35 60.0
Lalb_Chr24g0398741 Lupinus albus HOM05D000917 ORTHO05D000764 2.3e-06 55.1 39 64.1
MBI18_g09965_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 2.3e-06 55.1 45 55.6
MD15G1014000 Malus domestica HOM05D000917 ORTHO05D000764 2.3e-06 55.1 49 53.1
PSO781G0270 Papaver somniferum HOM05D000917 ORTHO05D000764 2.3e-06 55.1 39 64.1
Haze_23325 Corylus avellana HOM05D000917 ORTHO05D000764 3.1e-06 54.7 48 54.2
Duzib093G1078 Durio zibethinus HOM05D000917 ORTHO05D000764 3.1e-06 54.7 35 60.0
ECA238G2273 Erigeron canadensis HOM05D000917 ORTHO05D000764 3.1e-06 54.7 39 59.0
MBI09_g29274_MAGBIO Magnolia biondii HOM05D000917 ORTHO05D000764 3.1e-06 54.7 41 56.1
MD08G1014700 Malus domestica HOM05D000917 ORTHO05D000764 3.1e-06 54.7 49 53.1
PSO210G7244 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-06 54.7 39 64.1
PSO832G1120 Papaver somniferum HOM05D000917 ORTHO05D000764 3.1e-06 54.7 39 64.1
THA.LOC104811387 Tarenaya hassleriana HOM05D000917 ORTHO05D000764 3.1e-06 54.7 45 57.8
Thecc.03G050900 Theobroma cacao HOM05D000917 ORTHO05D000764 3.1e-06 54.7 49 53.1
Thecc.08G042300 Theobroma cacao HOM05D000917 ORTHO05D000764 3.1e-06 54.7 39 59.0
CSS0031470 Camellia sinensis var. sinensis HOM05D000917 ORTHO05D000764 4.0e-06 54.3 45 53.3
CDE04G2188 Ceratophyllum demersum HOM05D000917 ORTHO05D000764 4.0e-06 54.3 49 55.1
Duzib041G0621 Durio zibethinus HOM05D000917 ORTHO05D000764 4.0e-06 54.3 35 60.0
HanXRQChr12g0379411 Helianthus annuus HOM05D000917 ORTHO05D000764 4.0e-06 54.3 41 53.7
Lj4A26G46 Lonicera japonica HOM05D000917 ORTHO05D000764 4.0e-06 54.3 39 59.0
PGR083G1001 Punica granatum HOM05D000917 ORTHO05D000764 4.0e-06 54.3 49 51.0
QL02p011305 Quercus lobata HOM05D000917 ORTHO05D000764 4.0e-06 54.3 35 60.0
TWI36G0418 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 4.0e-06 54.3 39 59.0
Aa31LG3G570 Aethionema arabicum HOM05D000917 ORTHO05D000764 5.2e-06 53.9 45 57.8
BcaC06g31755 Brassica carinata HOM05D000917 ORTHO05D000764 5.2e-06 53.9 49 55.1
Dinv08134 Davidia involucrata HOM05D000917 ORTHO05D000764 5.2e-06 53.9 55 40.0
Thhalv10018062m.g Eutrema salsugineum HOM05D000917 ORTHO05D000764 5.2e-06 53.9 45 57.8
Lsat_1_v5_gn_7_22361 Lactuca sativa HOM05D000917 ORTHO05D000764 5.2e-06 53.9 44 52.3
Manes.08G127400 Manihot esculenta HOM05D000917 ORTHO05D000764 5.2e-06 53.9 45 57.8
Sp5g30760 Schrenkiella parvula HOM05D000917 ORTHO05D000764 5.2e-06 53.9 45 57.8
TPR.G18944 Trifolium pratense HOM05D000917 ORTHO05D000764 5.2e-06 53.9 54 46.3
AUR62020242 Chenopodium quinoa HOM05D000917 ORTHO05D000764 6.8e-06 53.5 45 53.3
Lsat_1_v5_gn_3_104380 Lactuca sativa HOM05D000917 ORTHO05D000764 6.8e-06 53.5 41 51.2
Peaxi162Scf00064g00065 Petunia axillaris HOM05D000917 ORTHO05D000764 6.8e-06 53.5 39 61.5
SHI08078 Sapria himalayana HOM05D000917 ORTHO05D000764 6.8e-06 53.5 50 42.0
TWI56G1011 Tripterygium wilfordii HOM05D000917 ORTHO05D000764 6.8e-06 53.5 49 51.0
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 6.8e-06 53.5 46 52.2
CANSAT35G1375 Cannabis sativa HOM05D000917 ORTHO05D000764 8.9e-06 53.1 39 61.5
Duzib168G2090 Durio zibethinus HOM05D000917 ORTHO05D000764 8.9e-06 53.1 46 47.8
FAN03G1968 Fragaria x ananassa HOM05D000917 ORTHO05D000764 8.9e-06 53.1 56 48.2
Glyma.11G180000 Glycine max HOM05D000917 ORTHO05D000764 8.9e-06 53.1 46 52.2
Lsat_1_v5_gn_3_126060 Lactuca sativa HOM05D000917 ORTHO05D000764 8.9e-06 53.1 53 49.1
Manes.05G149100 Manihot esculenta HOM05D000917 ORTHO05D000764 8.9e-06 53.1 39 59.0
Potri.005G237500 Populus trichocarpa HOM05D000917 ORTHO05D000764 8.9e-06 53.1 39 61.5
Sc02g0008510 Simmondsia chinensis HOM05D000917 ORTHO05D000764 8.9e-06 53.1 45 53.3
HPP92_025363 Vanilla planifolia HOM05D000917 ORTHO05D000764 8.9e-06 53.1 49 53.1
GSVIVG01009879001 Vitis vinifera HOM05D000917 ORTHO05D000764 8.9e-06 53.1 49 55.1
GSVIVG01036052001 Vitis vinifera HOM05D000917 ORTHO05D000764 8.9e-06 53.1 55 45.5


User provided reference genes

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