Gene: Sp1g12700

General Information

Structural Information

  • Species Schrenkiella parvula
  • Gene Identifier Sp1g12700
  • Transcript Identifier Sp1g12700.1
  • Gene Type Coding gene
  • Location ch1-1 : 4547710-4552306 : negative

Gene Family Information

  • ID HOM05D000917
  • #Genes/#Species 655/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Sp1g12700.v2.2
  • pacid 45094286

Descriptions

  • Description PTHR12341:SF30 - 5'-3' EXORIBONUCLEASE 2-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071035
ISO
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process AT5G42540
GO:0000967
ISO
PLAZA Integrative OrthologyrRNA 5'-end processing AT5G42540
GO:0006139
ISO
PLAZA Homology (enrichment)nucleobase-containing compound metabolic process HOM05D000917
GO:0060149
ISO
PLAZA Integrative Orthologynegative regulation of posttranscriptional gene silencing AT5G42540
GO:0010587
ISO
PLAZA Integrative OrthologymiRNA catabolic process AT5G42540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D000917
GO:0004534
ISO
PLAZA Integrative Orthology5'-3' exoribonuclease activity AT5G42540
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Cre06.g280050
GO:0004527
ISO
PLAZA Homology (enrichment)exonuclease activity HOM05D000917

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G42540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027073 5'-3' exoribonuclease
IPR041412 Xrn1, helical domain
Mapman id Description
35.1 not assigned.annotated