Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 3715.6 1872 100.0
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 2775.0 1876 73.4
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 2570.0 1923 67.5
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 2303.9 1831 63.7
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2191.0 1918 59.3
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 2156.3 1918 59.0
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 2120.5 1902 58.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 2112.4 1895 57.6
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 2088.2 1921 57.0
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 2076.2 1920 56.6
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 2053.1 1969 55.5
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 2052.3 1920 55.1
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2052.3 1891 56.5
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 2046.9 1922 55.1
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 2027.3 1891 55.9
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 2016.9 1927 55.1
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 2012.7 1917 54.7
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1976.4 1921 53.8
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1974.1 1929 53.9
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1973.4 1916 53.6
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1954.9 1953 52.6
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1953.7 1927 54.2
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1953.3 1928 53.5
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1951.8 1925 54.1
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1951.4 1916 53.2
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1944.9 1914 53.3
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1940.6 1909 53.3
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1939.5 1927 53.6
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1937.9 1950 53.4
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1937.2 1923 53.3
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1930.6 1940 52.6
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1929.5 1921 53.3
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1929.1 1913 52.8
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1922.9 1922 52.7
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1911.0 1911 52.5
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1909.8 1961 51.6
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1907.1 1933 52.5
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1906.3 1911 52.4
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1902.1 1942 52.4
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1896.3 1909 52.3
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1895.9 1910 52.3
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 0.0e+00 1892.5 1911 52.0
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1889.4 1899 52.9
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1889.4 1908 51.8
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1886.7 1787 55.0
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1874.0 1940 51.9
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1869.7 1797 54.4
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1859.7 1926 51.7
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1854.7 1905 52.1
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1841.2 1938 51.2
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1839.7 2092 48.9
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 0.0e+00 1839.3 1926 51.5
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1839.3 2032 49.5
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1822.0 1897 51.6
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 0.0e+00 1819.3 1916 50.8
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 0.0e+00 1818.1 1924 50.5
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 0.0e+00 1815.8 1866 52.7
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1808.5 1923 51.3
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 0.0e+00 1802.7 1928 50.9
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1794.2 1929 50.6
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1791.2 1924 51.6
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1783.5 1929 50.0
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 0.0e+00 1782.3 1926 50.5
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1781.9 1937 50.2
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1779.2 1930 49.8
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1778.1 2409 42.6
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1776.1 1910 50.6
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 0.0e+00 1744.2 1908 50.0
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 0.0e+00 1742.6 1915 49.2
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 0.0e+00 1719.5 1917 48.6
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1714.9 1915 48.3
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 0.0e+00 1713.7 1911 48.7
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 0.0e+00 1711.4 1916 48.9
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 0.0e+00 1704.1 1913 48.8
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 0.0e+00 1692.9 1917 48.0
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1692.6 1908 47.9
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 0.0e+00 1692.6 1914 49.0
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 0.0e+00 1679.5 1910 47.9
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1672.1 1926 47.9
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1670.6 1907 47.8
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 0.0e+00 1670.6 1933 47.6
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1669.4 1904 48.1
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1669.4 1903 48.0
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1664.0 1905 48.0
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 0.0e+00 1659.4 1910 47.9
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1654.0 1918 47.8
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 0.0e+00 1652.5 1923 47.6
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1647.5 1915 47.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 0.0e+00 1593.6 1863 47.6
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 0.0e+00 1588.9 1820 47.9
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 0.0e+00 1572.4 1916 46.5
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1559.7 1966 45.1
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 0.0e+00 1533.1 1943 44.1
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1527.7 1320 58.3
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1439.1 1205 59.8
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 0.0e+00 1395.2 1706 46.0
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 0.0e+00 1372.8 1938 41.1
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 0.0e+00 1366.3 1971 40.5
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1332.8 1658 46.4
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 0.0e+00 1276.9 1575 45.1
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 0.0e+00 1256.1 1933 38.7
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 1198.7 1096 56.1
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 0.0e+00 1184.1 1092 55.6
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 0.0e+00 1132.1 1117 53.6
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 3.1e-308 1062.8 2061 33.9
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 7.9e-304 1048.1 2034 33.7
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 2.2e-290 1003.4 895 57.8
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 3.6e-280 969.5 1978 33.2
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 4.1e-260 902.9 1903 32.7
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 3.0e-242 843.6 756 58.6
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 8.2e-192 676.0 898 40.4
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 8.1e-123 446.8 703 39.1
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-79 303.5 258 57.0
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.4e-69 270.0 174 79.9
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 1.2e-62 246.9 562 29.9
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 2.7e-62 245.7 171 70.8
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 1.4e-61 243.4 217 63.1
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-55 220.7 639 28.5
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 1.3e-51 210.3 218 44.5
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 2.7e-49 202.6 218 44.5
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.1e-46 193.0 138 71.7
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 5.9e-41 174.9 403 27.8
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 8.9e-37 161.0 166 46.4
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 5.4e-34 151.8 101 70.3
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 8.9e-29 134.4 209 31.6
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 9.8e-28 131.0 126 59.5
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 3.0e-24 119.4 94 59.6
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 1.2e-22 114.0 104 59.6
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 2.3e-21 109.8 82 64.6
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 8.3e-19 101.3 83 63.9
RcHm_v2.0_Chr5g0061981 Rosa chinensis HOM05D001072 ORTHO05D006807 3.3e-15 89.4 176 34.1
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 2.1e-14 86.7 175 28.6
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 2.6e-12 79.7 129 30.2
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 4.4e-12 79.0 62 54.8
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 3.8e-11 75.9 62 53.2
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 2.8e-06 59.7 83 39.8


User provided reference genes

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