Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.8e-103 379.8 270 100.0
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.6e-85 320.1 275 79.3
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 3.2e-81 305.8 278 78.1
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 9.4e-81 304.3 277 82.7
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.7e-78 294.3 171 89.5
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.8e-77 292.0 172 90.1
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.8e-76 290.0 172 89.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 9.1e-76 287.7 172 89.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-75 285.4 172 88.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 4.5e-75 285.4 172 88.4
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-74 283.9 173 87.9
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 2.9e-74 282.7 171 88.3
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.9e-72 274.6 280 80.0
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.0e-71 274.2 165 86.1
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.4e-71 273.9 283 72.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 2.3e-71 273.1 171 84.8
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 5.1e-71 271.9 164 86.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.7e-71 271.6 272 68.4
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 2.6e-70 269.6 153 91.5
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.4e-70 268.9 284 70.8
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 7.4e-70 268.1 283 72.8
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 9.7e-70 267.7 171 84.8
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 9.7e-70 267.7 177 80.2
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.7e-69 266.9 277 71.5
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.8e-69 265.4 284 65.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.8e-68 263.5 165 81.2
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.8e-68 263.5 165 84.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.1e-68 262.7 169 81.7
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 3.1e-68 262.7 285 65.3
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 4.1e-68 262.3 165 83.0
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.1e-68 262.3 165 80.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 7.0e-68 261.5 279 71.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 9.1e-68 261.2 165 81.8
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 9.1e-68 261.2 165 82.4
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 9.1e-68 261.2 154 87.0
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.2e-67 260.8 272 68.4
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-67 260.8 272 68.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.2e-67 260.8 171 82.5
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-67 260.8 287 69.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.2e-67 260.8 154 87.0
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.6e-67 259.6 165 82.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 3.5e-67 259.2 154 87.0
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.5e-67 258.8 156 86.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 7.7e-67 258.1 173 79.8
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.0e-66 257.7 165 81.2
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.0e-66 257.7 153 87.6
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.0e-66 257.7 288 66.3
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.0e-66 257.7 165 81.8
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 1.0e-66 257.7 165 81.2
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.3e-66 257.3 165 81.8
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.3e-66 257.3 165 81.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.7e-66 256.9 165 81.2
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.7e-66 256.9 173 79.8
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-66 256.5 159 82.4
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.2e-66 256.5 159 82.4
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 2.9e-66 256.1 154 85.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 2.9e-66 256.1 165 80.0
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 2.9e-66 256.1 165 80.0
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 2.9e-66 256.1 165 80.0
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 3.8e-66 255.8 165 81.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 3.8e-66 255.8 165 81.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.8e-66 255.8 272 62.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.0e-66 255.4 167 79.0
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 6.5e-66 255.0 153 85.6
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 6.5e-66 255.0 153 85.6
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 6.5e-66 255.0 165 81.2
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 6.5e-66 255.0 153 85.6
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 8.5e-66 254.6 167 78.4
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 8.5e-66 254.6 154 84.4
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.1e-65 254.2 154 83.8
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.5e-65 253.8 153 85.6
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.5e-65 253.8 165 80.6
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 1.9e-65 253.4 161 82.6
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-65 253.4 161 82.6
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 2.5e-65 253.1 153 85.6
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.5e-65 253.1 152 85.5
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 2.5e-65 253.1 153 85.6
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.2e-65 252.7 154 83.1
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.2e-65 252.7 268 65.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 3.2e-65 252.7 289 59.9
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 4.2e-65 252.3 166 80.1
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 5.5e-65 251.9 171 81.3
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 7.2e-65 251.5 152 84.9
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 1.2e-64 250.8 175 77.7
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.6e-64 250.4 165 79.4
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.6e-64 250.4 244 61.1
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 2.7e-64 249.6 153 85.0
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 4.7e-64 248.8 167 77.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 6.1e-64 248.4 173 78.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.1e-64 248.4 165 79.4
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 152 84.9
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 1.4e-63 247.3 289 64.0
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.4e-63 247.3 166 77.7
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.8e-63 246.9 162 79.0
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 1.8e-63 246.9 162 79.0
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 2.3e-63 246.5 150 84.0
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.3e-63 246.5 177 75.7
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 2.3e-63 246.5 175 76.6
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 3.0e-63 246.1 288 63.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.0e-63 246.1 166 77.1
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 4.0e-63 245.7 159 79.9
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.0e-63 245.7 288 62.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 4.0e-63 245.7 147 86.4
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.2e-63 245.4 284 71.5
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 8.8e-63 244.6 153 82.4
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.1e-62 244.2 169 77.5
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.0e-62 243.4 166 76.5
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.6e-62 243.0 154 81.2
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.6e-62 243.0 171 75.4
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 3.3e-62 242.7 170 78.2
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 9.7e-62 241.1 153 79.1
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.3e-61 240.7 172 73.3
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.3e-61 240.7 154 81.2
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.2e-61 240.0 154 80.5
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.2e-61 240.0 154 80.5
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 2.8e-61 239.6 171 74.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.7e-61 239.2 163 77.3
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.8e-61 238.8 163 77.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.4e-60 237.3 176 73.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 1.3e-58 230.7 293 64.5
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 2.9e-58 229.6 157 79.0
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 3.8e-58 229.2 278 61.5
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-57 227.6 153 79.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 9.4e-57 224.6 153 78.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.6e-56 223.8 150 78.7
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 2.1e-56 223.4 162 75.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.1e-56 223.4 143 80.4
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 4.7e-56 222.2 146 78.8
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 2.3e-55 219.9 160 73.8
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 8.8e-55 218.0 181 70.2
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 2.0e-54 216.9 146 78.8
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 3.4e-54 216.1 150 75.3
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 3.4e-54 216.1 160 74.4
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.6e-51 207.2 140 78.6
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 1.3e-50 204.1 162 69.1
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-48 196.8 275 59.3
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.1e-48 196.8 275 59.3
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.0e-47 193.0 123 80.5
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.2e-46 191.0 180 61.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.5e-46 190.7 140 71.4
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 9.8e-46 188.0 110 87.3
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.8e-46 188.0 173 65.3
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 3.7e-45 186.0 137 73.7
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 4.9e-45 185.7 148 66.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 8.3e-45 184.9 154 65.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 9.1e-44 181.4 135 71.1
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 7.2e-41 171.8 180 57.8
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.1e-40 170.2 118 75.4
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.8e-40 169.9 165 60.0
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 4.9e-37 159.1 95 85.3
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.0e-34 151.4 94 81.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 5.6e-33 145.6 110 70.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-29 133.3 170 51.8
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-29 133.3 170 51.8
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.9e-29 133.3 170 51.2
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.4e-28 131.0 170 50.6
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 7.0e-28 128.6 111 62.2
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.6e-19 99.4 163 42.3
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 7.8e-19 98.6 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 7.6e-14 82.0 40 100.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 7.1e-12 75.5 51 74.5
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 1.2e-11 74.7 58 72.4
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 3.5e-11 73.2 57 68.4
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 3.6e-08 63.2 68 54.4


User provided reference genes

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