Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 1.8e-124 449.5 277 100.0
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 4.3e-97 358.6 283 82.7
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 6.4e-93 344.7 282 81.6
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 9.3e-92 340.9 296 78.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 3.2e-84 315.8 290 73.8
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 5.4e-84 315.1 227 79.3
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.1e-83 313.2 221 81.4
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.1e-83 313.2 221 81.4
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.7e-82 310.1 230 77.4
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 1.9e-81 306.6 285 73.7
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.9e-81 306.6 275 79.3
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 2.1e-80 303.1 289 73.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 8.1e-80 301.2 206 80.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.1e-79 300.8 285 72.6
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.8e-79 300.1 228 74.6
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 4.0e-79 298.9 283 75.3
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 5.3e-79 298.5 178 89.3
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.9e-79 298.1 289 68.9
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.5e-78 297.0 305 66.6
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 1.5e-78 297.0 171 91.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 2.0e-78 296.6 299 69.9
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 2.6e-78 296.2 208 80.8
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 3.4e-78 295.8 293 72.0
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 3.4e-78 295.8 295 69.5
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 5.8e-78 295.0 224 76.3
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 4.9e-77 292.0 297 69.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.4e-77 291.2 276 68.8
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 8.4e-77 291.2 297 68.7
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 8.4e-77 291.2 290 66.6
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-76 290.8 172 90.1
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 2.4e-76 289.7 217 76.5
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.6e-75 285.4 201 77.1
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.3e-74 283.9 274 71.5
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.3e-74 283.9 274 71.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.3e-74 283.9 201 77.1
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 8.7e-74 281.2 276 65.2
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 8.7e-74 281.2 254 66.9
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.5e-73 279.6 291 69.8
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.3e-73 278.9 211 73.5
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 4.3e-73 278.9 287 72.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 5.6e-73 278.5 247 75.3
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.4e-73 278.1 152 94.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 2.1e-72 276.6 230 71.3
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.1e-72 276.6 305 64.3
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.7e-72 275.8 210 74.8
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 4.8e-72 275.4 225 71.6
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 6.2e-72 275.0 211 74.9
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 8.1e-72 274.6 289 70.9
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-71 273.9 186 78.5
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 1.4e-71 273.9 290 71.0
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.1e-71 272.7 272 67.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-71 272.7 183 81.4
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 3.1e-71 272.7 183 81.4
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 5.3e-71 271.9 209 70.8
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 5.3e-71 271.9 238 71.4
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 5.3e-71 271.9 301 64.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 5.3e-71 271.9 304 63.8
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 6.9e-71 271.6 260 65.4
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 6.9e-71 271.6 205 74.6
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 1.5e-70 270.4 213 73.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 1.5e-70 270.4 166 84.9
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 2.0e-70 270.0 168 83.9
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 4.5e-70 268.9 199 75.4
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 4.5e-70 268.9 215 73.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 4.5e-70 268.9 171 83.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.6e-70 268.1 164 84.1
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 7.6e-70 268.1 278 73.4
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 1.0e-69 267.7 248 67.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.3e-69 267.3 180 77.8
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.7e-69 266.9 267 62.9
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.7e-69 266.9 193 74.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 2.2e-69 266.5 208 72.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 2.2e-69 266.5 208 72.1
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 3.8e-69 265.8 176 79.5
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 8.4e-69 264.6 210 70.5
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 2.5e-68 263.1 153 86.9
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 2.5e-68 263.1 152 88.2
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.2e-68 262.7 251 68.5
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.2e-68 262.7 251 68.5
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 3.2e-68 262.7 153 86.3
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.2e-68 262.3 164 82.9
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 9.3e-68 261.2 211 69.7
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 9.3e-68 261.2 184 78.3
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 9.3e-68 261.2 211 69.7
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 9.3e-68 261.2 297 63.3
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.2e-67 260.8 179 76.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.2e-67 260.8 284 65.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 1.6e-67 260.4 207 72.9
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 2.1e-67 260.0 215 70.7
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.5e-67 259.2 251 68.1
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 3.5e-67 259.2 293 68.6
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 1.0e-66 257.7 291 70.8
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.0e-66 257.7 238 66.8
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 1.0e-66 257.7 178 78.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.8e-66 256.9 230 68.3
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 1.8e-66 256.9 205 69.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 2.3e-66 256.5 214 70.6
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 1.1e-65 254.2 171 79.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 1.9e-65 253.4 146 87.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.7e-65 251.9 239 70.3
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 5.7e-65 251.9 219 67.6
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 7.4e-65 251.5 265 63.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.3e-64 250.8 239 69.5
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.3e-64 250.8 256 62.1
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 1.6e-64 250.4 290 66.6
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.6e-64 250.4 174 78.2
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 2.8e-64 249.6 151 84.1
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 8.2e-64 248.1 204 71.1
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 1.1e-63 247.7 153 82.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 3.1e-63 246.1 290 64.8
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 3.1e-63 246.1 162 79.0
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 3.1e-63 246.1 247 66.4
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.1e-63 245.7 302 60.9
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 6.9e-63 245.0 293 64.5
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.2e-62 244.2 153 81.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.2e-62 244.2 153 81.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 1.2e-62 244.2 297 60.9
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.4e-62 242.7 165 78.2
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 3.4e-62 242.7 290 62.1
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 3.4e-62 242.7 290 62.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 4.5e-62 242.3 182 71.4
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 9.3e-60 234.6 293 59.7
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.6e-59 232.6 152 79.6
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 4.6e-59 232.3 149 81.2
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 7.9e-59 231.5 152 80.3
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 1.8e-58 230.3 292 63.0
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 2.3e-58 229.9 275 65.5
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 2.3e-58 229.9 275 65.5
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 3.0e-58 229.6 145 80.7
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.9e-57 226.9 241 63.9
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 5.7e-57 225.3 200 67.0
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.6e-56 223.8 168 73.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 1.6e-56 223.8 159 77.4
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 1.6e-56 223.8 143 80.4
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 2.8e-56 223.0 211 64.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 1.7e-53 213.8 137 80.3
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.2e-53 213.4 206 60.7
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 1.4e-50 204.1 175 68.6
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 1.4e-50 204.1 153 73.2
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 5.1e-50 202.2 122 84.4
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.3e-49 199.1 182 63.2
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 2.2e-48 196.8 207 62.8
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 1.4e-47 194.1 141 74.5
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 7.7e-46 188.3 147 66.0
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.9e-45 186.4 224 55.4
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 8.5e-45 184.9 189 59.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 5.5e-44 182.2 153 64.7
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 5.2e-42 175.6 125 73.6
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 4.8e-40 169.1 164 60.4
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 1.4e-39 167.5 192 59.9
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 4.7e-35 152.5 94 81.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.3e-32 144.4 110 69.1
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 4.8e-32 142.5 190 50.0
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-31 139.8 203 49.3
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.1e-31 139.8 203 49.3
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 7.2e-28 128.6 139 53.2
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 9.4e-28 128.3 274 43.8
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.9e-21 106.7 203 41.9
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 1.4e-18 97.8 53 86.8
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 3.1e-15 86.7 156 50.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-14 84.0 70 68.6
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 1.3e-13 81.3 40 97.5
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 9.5e-12 75.1 42 83.3
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 2.7e-06 57.0 132 39.4


User provided reference genes

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