Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g099850 Medicago truncatula HOM05D001201 ORTHO05D001100 6.8e-122 440.7 220 100.0
TPR.G10256 Trifolium pratense HOM05D001201 ORTHO05D001100 3.0e-37 159.5 172 55.8
Medtr7g103680 Medicago truncatula HOM05D001201 ORTHO05D001100 3.7e-35 152.5 173 54.3
Psat3g035920 Pisum sativum HOM05D001201 ORTHO05D001100 8.5e-32 141.4 174 51.7
Ca_11125_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 2.1e-30 136.7 174 48.3
Ca_20517_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 2.1e-30 136.7 174 48.3
Glyma.03G190800 Glycine max HOM05D001201 ORTHO05D001100 4.0e-29 132.5 190 44.2
arahy.Tifrunner.gnm1.ann1.N246S2 Arachis hypogaea HOM05D001201 ORTHO05D001100 1.1e-26 124.4 182 42.3
Lalb_Chr01g0018331 Lupinus albus HOM05D001201 ORTHO05D001100 1.8e-26 123.6 181 44.2
arahy.Tifrunner.gnm1.ann1.GS0SHW Arachis hypogaea HOM05D001201 ORTHO05D001100 2.4e-26 123.2 182 41.8
Lj1g0027290 Lotus japonicus HOM05D001201 ORTHO05D001100 2.1e-22 110.2 174 43.7
VMungo0720G0212 Vigna mungo HOM05D001201 ORTHO05D001100 5.2e-21 105.5 168 41.1
Psat6g079040 Pisum sativum HOM05D001201 ORTHO05D001100 9.8e-20 101.3 162 40.7
QL07p040602 Quercus lobata HOM05D001201 ORTHO05D001100 9.8e-20 101.3 183 33.3
Ciclev10010892m.g Citrus clementina HOM05D001201 ORTHO05D001100 1.4e-18 97.4 242 31.4
Glyma.10G065900 Glycine max HOM05D001201 ORTHO05D001100 1.8e-18 97.1 100 50.0
Thecc.05G080600 Theobroma cacao HOM05D001201 ORTHO05D001100 5.4e-18 95.5 176 34.7
Ca_11623_v3 Cicer arietinum L. HOM05D001201 ORTHO05D001100 7.0e-18 95.1 167 40.1
Glyma.13G151000 Glycine max HOM05D001201 ORTHO05D001100 7.0e-18 95.1 100 49.0
Gohir.D04G104500 Gossypium hirsutum HOM05D001201 ORTHO05D001100 1.2e-17 94.4 176 35.2
Gorai.009G408300 Gossypium raimondii HOM05D001201 ORTHO05D001100 1.2e-17 94.4 179 34.6
Haze_19533 Corylus avellana HOM05D001201 ORTHO05D001100 2.0e-17 93.6 183 34.4
PGSC0003DMG400002719 Solanum tuberosum HOM05D001201 ORTHO05D001100 4.6e-17 92.4 156 36.5
Duzib093G0950 Durio zibethinus HOM05D001201 ORTHO05D001100 5.9e-17 92.0 175 35.4
Medtr1g061220 Medicago truncatula HOM05D001201 ORTHO05D001100 1.0e-16 91.3 170 37.6
Phvul.007G223600 Phaseolus vulgaris HOM05D001201 ORTHO05D001100 1.3e-16 90.9 121 45.5
Lj3A1003T41 Lonicera japonica HOM05D001201 ORTHO05D001100 1.7e-16 90.5 161 38.5
Atru.chr8.1639 Acer truncatum HOM05D001201 ORTHO05D001100 2.3e-16 90.1 193 31.6
CSS0012668 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 2.3e-16 90.1 152 36.8
CAN.G824.27 Capsicum annuum HOM05D001201 ORTHO05D001100 2.3e-16 90.1 175 36.0
TWI53G2113 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 2.3e-16 90.1 179 33.5
Gohir.A04G066400 Gossypium hirsutum HOM05D001201 ORTHO05D001100 8.6e-16 88.2 176 35.2
Solyc09g009080.4 Solanum lycopersicum HOM05D001201 ORTHO05D001100 8.6e-16 88.2 156 35.3
TPR.G5703 Trifolium pratense HOM05D001201 ORTHO05D001100 1.1e-15 87.8 218 34.9
Phvul.001G186500 Phaseolus vulgaris HOM05D001201 ORTHO05D001100 1.9e-15 87.0 153 38.6
Peaxi162Scf00433g00067 Petunia axillaris HOM05D001201 ORTHO05D001100 3.3e-15 86.3 192 31.2
Sopen09g003780 Solanum pennellii HOM05D001201 ORTHO05D001100 3.3e-15 86.3 156 34.6
FvH4_6g17860 Fragaria vesca HOM05D001201 ORTHO05D001100 4.3e-15 85.9 162 40.1
FAN14G4458 Fragaria x ananassa HOM05D001201 ORTHO05D001100 4.3e-15 85.9 162 40.1
VMungo1383G2283 Vigna mungo HOM05D001201 ORTHO05D001100 4.3e-15 85.9 164 38.4
CANSAT80G1516 Cannabis sativa HOM05D001201 ORTHO05D001100 7.3e-15 85.1 164 33.5
FAN05G3005 Fragaria x ananassa HOM05D001201 ORTHO05D001100 9.5e-15 84.7 162 39.5
TWI77G0704 Tripterygium wilfordii HOM05D001201 ORTHO05D001100 9.5e-15 84.7 187 32.1
GSVIVG01033777001 Vitis vinifera HOM05D001201 ORTHO05D001100 9.5e-15 84.7 179 34.6
Manes.08G020500 Manihot esculenta HOM05D001201 ORTHO05D001100 1.2e-14 84.3 180 32.8
FAN21G3547 Fragaria x ananassa HOM05D001201 ORTHO05D001100 2.8e-14 83.2 162 39.5
RcHm_v2.0_Chr3g0472091 Rosa chinensis HOM05D001201 ORTHO05D001100 2.8e-14 83.2 162 40.1
FAN05G4586 Fragaria x ananassa HOM05D001201 ORTHO05D001100 3.6e-14 82.8 162 38.9
COL.COLO4_29819 Corchorus olitorius HOM05D001201 ORTHO05D001100 4.7e-14 82.4 194 32.0
Prupe.7G118000 Prunus persica HOM05D001201 ORTHO05D001100 4.7e-14 82.4 178 34.3
CiPaw.09G008500 Carya illinoinensis HOM05D001201 ORTHO05D001100 8.0e-14 81.6 214 32.2
FAN02G1301 Fragaria x ananassa HOM05D001201 ORTHO05D001100 8.0e-14 81.6 162 38.9
FAN11G1782 Fragaria x ananassa HOM05D001201 ORTHO05D001100 1.4e-13 80.9 162 38.9
FAN16G0828 Fragaria x ananassa HOM05D001201 ORTHO05D001100 1.4e-13 80.9 162 40.1
Potri.006G116000 Populus trichocarpa HOM05D001201 ORTHO05D001100 8.9e-13 78.2 187 27.8
Dinv21259 Davidia involucrata HOM05D001201 ORTHO05D001100 1.2e-12 77.8 202 29.2
FAN09G1539 Fragaria x ananassa HOM05D001201 ORTHO05D001100 1.2e-12 77.8 162 38.3
Sabra06G0090700 Salix brachista HOM05D001201 ORTHO05D001100 2.0e-12 77.0 196 28.1
AL3G21300 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 2.6e-12 76.6 148 35.1
HanXRQChr07g0202991 Helianthus annuus HOM05D001201 ORTHO05D001100 2.6e-12 76.6 96 43.8
Lj5g0003988 Lotus japonicus HOM05D001201 ORTHO05D001100 2.6e-12 76.6 81 55.6
vmacro08815 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 2.6e-12 76.6 165 32.7
MD12G1017600 Malus domestica HOM05D001201 ORTHO05D001100 3.4e-12 76.3 213 31.9
Sed0001020 Sechium edule HOM05D001201 ORTHO05D001100 4.4e-12 75.9 217 29.5
CsaV3_3G036780 Cucumis sativus L. HOM05D001201 ORTHO05D001100 5.8e-12 75.5 165 33.3
Gohir.A09G136700 Gossypium hirsutum HOM05D001201 ORTHO05D001100 5.8e-12 75.5 175 30.9
Nitab4.5_0001922g0010 Nicotiana tabacum HOM05D001201 ORTHO05D001100 7.5e-12 75.1 192 33.3
Lalb_Chr21g0315671 Lupinus albus HOM05D001201 ORTHO05D001100 9.8e-12 74.7 182 30.8
MD14G1015300 Malus domestica HOM05D001201 ORTHO05D001100 9.8e-12 74.7 163 35.6
Manes.09G060800 Manihot esculenta HOM05D001201 ORTHO05D001100 9.8e-12 74.7 178 31.5
SGA_v2.0_scaffold40G15408 Striga asiatica HOM05D001201 ORTHO05D001100 1.3e-11 74.3 163 31.9
HanXRQChr14g0432601 Helianthus annuus HOM05D001201 ORTHO05D001100 2.2e-11 73.6 146 37.0
HanXRQChr13g0400001 Helianthus annuus HOM05D001201 ORTHO05D001100 2.9e-11 73.2 100 41.0
ClCG10G019400 Citrullus lanatus HOM05D001201 ORTHO05D001100 3.7e-11 72.8 188 29.3
Cc06_g05230 Coffea canephora HOM05D001201 ORTHO05D001100 3.7e-11 72.8 165 31.5
PGR004G0133 Punica granatum HOM05D001201 ORTHO05D001100 3.7e-11 72.8 192 28.1
SalBow3G3680 Salvia bowleyana HOM05D001201 ORTHO05D001100 4.9e-11 72.4 204 28.4
unitig_27.g25399 Utricularia gibba HOM05D001201 ORTHO05D001100 6.4e-11 72.0 175 29.1
AT2G36490 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 8.3e-11 71.6 200 30.0
Migut.J00987 Erythranthe guttata HOM05D001201 ORTHO05D001100 8.3e-11 71.6 192 30.7
FvH4_3g04410 Fragaria vesca HOM05D001201 ORTHO05D001100 8.3e-11 71.6 188 33.5
DCAR_017626 Daucus carota HOM05D001201 ORTHO05D001100 1.4e-10 70.9 148 37.2
ECA238G4359 Erigeron canadensis HOM05D001201 ORTHO05D001100 1.4e-10 70.9 201 28.9
Solyc10g083630.2 Solanum lycopersicum HOM05D001201 ORTHO05D001100 1.9e-10 70.5 151 31.1
CAN.G1138.12 Capsicum annuum HOM05D001201 ORTHO05D001100 2.4e-10 70.1 109 34.9
Sopen10g033100 Solanum pennellii HOM05D001201 ORTHO05D001100 2.4e-10 70.1 144 31.9
MELO3C009432.2 Cucumis melo HOM05D001201 ORTHO05D001100 3.2e-10 69.7 219 28.8
Lsat_1_v5_gn_2_21401 Lactuca sativa HOM05D001201 ORTHO05D001100 3.2e-10 69.7 161 31.7
Nitab4.5_0000132g0200 Nicotiana tabacum HOM05D001201 ORTHO05D001100 3.2e-10 69.7 109 36.7
Nitab4.5_0005311g0020 Nicotiana tabacum HOM05D001201 ORTHO05D001100 3.2e-10 69.7 109 36.7
Rhsim04G0135900 Rhododendron simsii HOM05D001201 ORTHO05D001100 3.2e-10 69.7 123 35.8
Eucgr.A01547 Eucalyptus grandis HOM05D001201 ORTHO05D001100 7.0e-10 68.6 112 35.7
Aa31LG3G2540 Aethionema arabicum HOM05D001201 ORTHO05D001100 9.2e-10 68.2 145 33.1
AT3G10010 Arabidopsis thaliana HOM05D001201 ORTHO05D001100 1.2e-09 67.8 97 41.2
Carub.0004s1830 Capsella rubella HOM05D001201 ORTHO05D001100 1.2e-09 67.8 107 36.4
Peaxi162Scf00110g01921 Petunia axillaris HOM05D001201 ORTHO05D001100 1.2e-09 67.8 170 29.4
CARHR084510 Cardamine hirsuta HOM05D001201 ORTHO05D001100 1.6e-09 67.4 169 28.4
AUR62033581 Chenopodium quinoa HOM05D001201 ORTHO05D001100 2.0e-09 67.0 127 32.3
vmacro07365 Vaccinium macrocarpon HOM05D001201 ORTHO05D001100 2.0e-09 67.0 115 39.1
Oeu032421.3 Olea europaea HOM05D001201 ORTHO05D001100 2.7e-09 66.6 75 46.7
Rhsim03G0081500 Rhododendron simsii HOM05D001201 ORTHO05D001100 2.7e-09 66.6 159 30.8
Aa31LG5G21680 Aethionema arabicum HOM05D001201 ORTHO05D001100 3.5e-09 66.2 106 35.8
Hund04064 Selenicereus undatus HOM05D001201 ORTHO05D001100 3.5e-09 66.2 112 32.1
AUR62041417 Chenopodium quinoa HOM05D001201 ORTHO05D001100 4.6e-09 65.9 127 32.3
Thhalv10012472m.g Eutrema salsugineum HOM05D001201 ORTHO05D001100 6.0e-09 65.5 141 34.8
Oeu040540.1 Olea europaea HOM05D001201 ORTHO05D001100 7.8e-09 65.1 71 47.9
Actinidia31293 Actinidia chinensis HOM05D001201 ORTHO05D001100 1.0e-08 64.7 71 46.5
ECA233G0191 Erigeron canadensis HOM05D001201 ORTHO05D001100 1.0e-08 64.7 66 50.0
Thhalv10016139m.g Eutrema salsugineum HOM05D001201 ORTHO05D001100 1.0e-08 64.7 190 31.6
Oeu040537.2 Olea europaea HOM05D001201 ORTHO05D001100 1.0e-08 64.7 75 48.0
Atru.chr12.965 Acer truncatum HOM05D001201 ORTHO05D001100 1.3e-08 64.3 174 31.6
arahy.Tifrunner.gnm1.ann1.AM3VD0 Arachis hypogaea HOM05D001201 ORTHO05D001100 1.3e-08 64.3 51 56.9
arahy.Tifrunner.gnm1.ann1.K8W5NT Arachis hypogaea HOM05D001201 ORTHO05D001100 1.3e-08 64.3 51 56.9
MSTRG.19228 Avicennia marina HOM05D001201 ORTHO05D001100 1.3e-08 64.3 164 29.9
AL4G32670 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.7e-08 63.9 204 27.0
AL4G32680 Arabidopsis lyrata HOM05D001201 ORTHO05D001100 1.7e-08 63.9 196 29.6
Carub.0004s1831 Capsella rubella HOM05D001201 ORTHO05D001100 2.3e-08 63.5 101 36.6
AUR62002762 Chenopodium quinoa HOM05D001201 ORTHO05D001100 2.3e-08 63.5 168 30.4
THA.LOC104816669 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 3.9e-08 62.8 206 28.2
EL10Ac7g16995 Beta vulgaris HOM05D001201 ORTHO05D001100 5.0e-08 62.4 137 29.2
Ah.08g210980 Amaranthus hybridus HOM05D001201 ORTHO05D001100 6.6e-08 62.0 127 31.5
BcaC02g11765 Brassica carinata HOM05D001201 ORTHO05D001100 6.6e-08 62.0 111 33.3
A05p09310 Brassica napus HOM05D001201 ORTHO05D001100 6.6e-08 62.0 111 33.3
C04p11600 Brassica napus HOM05D001201 ORTHO05D001100 6.6e-08 62.0 111 33.3
BolC4t22808H Brassica oleracea HOM05D001201 ORTHO05D001100 6.6e-08 62.0 111 33.3
BraA05t19888Z Brassica rapa HOM05D001201 ORTHO05D001100 6.6e-08 62.0 111 33.3
Gohir.D09G137800 Gossypium hirsutum HOM05D001201 ORTHO05D001100 6.6e-08 62.0 132 29.5
Gorai.006G158300 Gossypium raimondii HOM05D001201 ORTHO05D001100 6.6e-08 62.0 132 29.5
THA.LOC104827483 Tarenaya hassleriana HOM05D001201 ORTHO05D001100 6.6e-08 62.0 157 26.8
Oeu027978.3 Olea europaea HOM05D001201 ORTHO05D001100 1.1e-07 61.2 96 36.5
TAR369G0069 Trochodendron aralioides HOM05D001201 ORTHO05D001100 1.1e-07 61.2 97 36.1
Thhalv10019961m.g Eutrema salsugineum HOM05D001201 ORTHO05D001100 1.5e-07 60.8 70 42.9
Nn2g13995 Nelumbo nucifera HOM05D001201 ORTHO05D001100 1.5e-07 60.8 171 31.0
BcaB02g09350 Brassica carinata HOM05D001201 ORTHO05D001100 1.9e-07 60.5 111 32.4
Sc02g0001140 Simmondsia chinensis HOM05D001201 ORTHO05D001100 1.9e-07 60.5 182 25.8
Sc20g0006010 Simmondsia chinensis HOM05D001201 ORTHO05D001100 1.9e-07 60.5 106 34.9
Lsat_1_v5_gn_6_27040 Lactuca sativa HOM05D001201 ORTHO05D001100 4.3e-07 59.3 76 39.5
Carub.0003s0911 Capsella rubella HOM05D001201 ORTHO05D001100 5.6e-07 58.9 136 33.8
CSS0002130 Camellia sinensis var. sinensis HOM05D001201 ORTHO05D001100 7.3e-07 58.5 93 37.6
Cfa011221 Carpinus fangiana HOM05D001201 ORTHO05D001100 7.3e-07 58.5 91 37.4
Haze_02614 Corylus avellana HOM05D001201 ORTHO05D001100 7.3e-07 58.5 91 37.4
Lj2A129T52 Lonicera japonica HOM05D001201 ORTHO05D001100 9.5e-07 58.2 126 32.5
Manes.10G055200 Manihot esculenta HOM05D001201 ORTHO05D001100 1.2e-06 57.8 92 38.0
QL04p041091 Quercus lobata HOM05D001201 ORTHO05D001100 1.6e-06 57.4 94 42.6
MD17G1253500 Malus domestica HOM05D001201 ORTHO05D001100 2.1e-06 57.0 153 30.1
TAR633G1723 Trochodendron aralioides HOM05D001201 ORTHO05D001100 2.1e-06 57.0 166 29.5
DCAR_013953 Daucus carota HOM05D001201 ORTHO05D001100 2.8e-06 56.6 180 28.3
Dinv20843 Davidia involucrata HOM05D001201 ORTHO05D001100 2.8e-06 56.6 91 39.6
TAR374G1252 Trochodendron aralioides HOM05D001201 ORTHO05D001100 2.8e-06 56.6 97 38.1
MELO3C024516.2 Cucumis melo HOM05D001201 ORTHO05D001100 3.6e-06 56.2 105 35.2
Medtr2g075890 Medicago truncatula HOM05D001201 ORTHO05D001100 6.2e-06 55.5 58 51.7
MD07G1071800 Malus domestica HOM05D001201 ORTHO05D001100 8.1e-06 55.1 94 35.1
Sed0026916 Sechium edule HOM05D001201 ORTHO05D001100 8.1e-06 55.1 104 30.8


User provided reference genes

Program Settings