Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 1.5e-106 389.4 186 100.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 7.8e-95 350.5 187 92.0
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 2.1e-92 342.4 185 89.2
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.0e-91 338.2 185 88.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.9e-89 331.3 186 86.0
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.9e-89 331.3 186 86.0
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 2.4e-88 328.9 185 85.9
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 6.0e-87 324.3 186 84.4
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.4e-81 303.9 185 80.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 8.4e-81 303.9 185 80.0
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.9e-80 302.8 185 80.0
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 7.4e-77 290.8 186 79.0
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 4.0e-75 285.0 185 76.2
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 5.3e-75 284.6 186 76.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.0e-73 280.4 185 73.5
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.4e-67 259.2 189 70.4
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 6.9e-67 257.7 189 69.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 1.0e-57 227.3 184 63.0
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.0e-57 227.3 185 63.8
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 6.5e-57 224.6 185 63.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 6.5e-57 224.6 185 62.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.1e-56 223.8 184 62.5
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 1.4e-56 223.4 185 62.2
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 5.5e-56 221.5 185 61.1
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.2e-56 221.1 182 62.6
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 9.4e-56 220.7 185 61.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.2e-55 220.3 185 62.2
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 2.7e-55 219.2 185 60.5
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 3.6e-55 218.8 185 62.2
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.7e-55 218.4 185 61.6
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.7e-55 218.4 185 62.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.7e-55 218.4 185 61.6
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 4.7e-55 218.4 185 61.6
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 3.9e-54 215.3 185 60.0
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 3.9e-54 215.3 185 61.6
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 3.9e-54 215.3 179 60.9
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 6.7e-54 214.5 185 59.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 6.7e-54 214.5 186 61.8
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.8e-54 214.2 186 60.8
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 8.8e-54 214.2 143 74.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.1e-53 213.8 185 58.9
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 1.1e-53 213.8 185 58.4
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.1e-53 213.8 185 61.1
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.5e-53 213.4 187 60.4
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 2.6e-53 212.6 185 59.5
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 2.6e-53 212.6 185 57.8
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.3e-53 212.2 185 58.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 7.4e-53 211.1 185 60.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 1.3e-52 210.3 185 58.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.3e-52 210.3 185 60.0
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.3e-52 210.3 185 60.0
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 1.7e-52 209.9 185 60.0
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.2e-52 209.5 185 58.9
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 2.8e-52 209.1 185 56.8
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.8e-52 209.1 185 58.4
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.8e-52 209.1 185 59.5
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.7e-52 208.8 185 58.9
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 3.7e-52 208.8 185 58.9
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 6.3e-52 208.0 183 58.5
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.8e-51 206.5 186 59.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.4e-51 206.1 186 59.1
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 2.4e-51 206.1 185 58.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 2.4e-51 206.1 185 58.4
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 3.1e-51 205.7 187 56.7
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 4.1e-51 205.3 185 55.7
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 4.1e-51 205.3 184 58.7
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.3e-51 204.9 185 58.9
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 5.3e-51 204.9 185 57.3
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 7.0e-51 204.5 185 58.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 1.2e-50 203.8 185 56.2
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.5e-50 203.4 186 57.0
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.5e-50 201.8 186 60.2
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 7.7e-50 201.1 185 57.3
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.7e-49 199.9 184 54.3
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.7e-49 199.9 184 54.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.2e-49 199.5 185 56.8
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.9e-49 199.1 185 55.7
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 3.8e-49 198.7 166 62.0
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 5.0e-49 198.4 175 58.3
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 5.0e-49 198.4 185 58.4
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 5.0e-49 198.4 186 56.5
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 8.5e-49 197.6 185 57.3
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 8.5e-49 197.6 185 57.3
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 8.5e-49 197.6 184 56.0
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 8.5e-49 197.6 185 55.7
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 1.4e-48 196.8 185 55.7
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 3.2e-48 195.7 185 55.7
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 7.2e-48 194.5 183 57.4
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 9.4e-48 194.1 183 56.3
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 9.4e-48 194.1 161 60.9
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 1.2e-47 193.7 163 59.5
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.1e-47 193.0 185 55.7
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.1e-47 193.0 183 56.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 2.7e-47 192.6 185 53.5
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 3.6e-47 192.2 185 56.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 1.0e-46 190.7 183 53.6
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-46 190.3 185 54.1
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 1.4e-46 190.3 185 54.1
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.4e-46 190.3 185 53.5
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.4e-46 190.3 159 60.4
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.8e-46 189.9 185 53.0
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-46 189.5 173 54.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.0e-46 189.1 185 51.4
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.2e-46 188.3 185 52.4
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 6.7e-46 188.0 185 53.0
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.8e-46 187.6 185 54.1
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 8.8e-46 187.6 185 54.1
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.1e-45 187.2 185 54.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.1e-45 187.2 185 53.0
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 1.1e-45 187.2 171 53.2
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.0e-45 186.4 185 52.4
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 2.6e-45 186.0 186 53.2
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 4.4e-45 185.3 185 53.0
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 4.4e-45 185.3 177 55.9
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 5.7e-45 184.9 185 53.5
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 7.4e-45 184.5 185 54.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.7e-45 184.1 178 53.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 9.7e-45 184.1 185 54.1
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-44 183.7 185 54.1
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.7e-44 183.3 185 52.4
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 1.7e-44 183.3 185 54.1
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 2.2e-44 183.0 173 56.6
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 4.8e-44 181.8 185 53.0
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 4.8e-44 181.8 185 53.0
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 8.2e-44 181.0 185 53.5
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 8.2e-44 181.0 185 53.5
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 1.1e-43 180.6 185 53.5
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.4e-43 179.5 185 53.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.1e-43 179.1 185 53.0
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 4.1e-43 178.7 186 53.8
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 1.6e-42 176.8 174 52.9
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 1.6e-42 176.8 193 49.2
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.0e-41 174.1 185 52.4
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.0e-41 174.1 185 52.4
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.7e-41 173.3 149 61.7
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.9e-41 172.6 183 50.3
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 5.0e-41 171.8 185 48.6
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 6.5e-41 171.4 174 51.1
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.5e-40 169.5 170 52.4
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 5.5e-40 168.3 187 51.3
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 7.2e-40 167.9 168 54.2
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.1e-39 166.4 174 52.3
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 8.0e-39 164.5 202 46.5
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.0e-38 164.1 183 47.5
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 4.0e-38 162.2 183 51.4
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 1.3e-36 157.1 185 49.2
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.7e-36 156.8 173 49.1
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 4.8e-36 155.2 185 48.1
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 1.4e-35 153.7 122 58.2
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 3.1e-35 152.5 172 48.3
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 3.1e-35 152.5 185 49.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 3.1e-35 152.5 172 46.5
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 4.1e-35 152.1 185 49.2
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 4.1e-35 152.1 148 54.7
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 7.0e-35 151.4 151 51.7
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 6.5e-33 144.8 153 52.3
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.7e-31 139.4 152 50.0
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 4.7e-31 138.7 171 46.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 5.2e-30 135.2 101 64.4
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 8.8e-30 134.4 185 44.9
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.7e-29 131.7 204 40.2
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.1e-27 127.5 105 61.9
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 5.9e-26 121.7 193 37.3
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 7.2e-24 114.8 136 49.3
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-20 104.0 114 50.9
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 2.2e-20 103.2 84 56.0
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 2.8e-20 102.8 67 71.6
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.8e-20 102.8 87 60.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 5.4e-19 98.6 117 48.7
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 4.5e-18 95.5 67 68.7
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.3e-17 94.0 102 43.1
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 2.9e-17 92.8 99 51.5
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-16 90.9 66 66.7
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.5e-16 90.5 67 65.7
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 1.6e-15 87.0 95 52.6
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.1e-15 86.7 97 50.5
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 1.0e-14 84.3 90 37.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 1.8e-14 83.6 110 37.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 8.9e-14 81.3 76 52.6
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 9.8e-13 77.8 86 52.3
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 1.3e-12 77.4 67 58.2
Medtr4g119190 Medicago truncatula HOM05D003786 ORTHO05D004375 3.2e-11 72.8 48 68.8
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 1.4e-06 57.4 110 30.9


User provided reference genes

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