Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 0.0e+00 3986.0 2049 100.0
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 0.0e+00 1533.5 2100 43.9
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 0.0e+00 1419.8 2078 42.2
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 0.0e+00 1173.3 2071 36.4
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1162.9 2064 35.5
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1156.7 2067 35.8
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1155.6 2065 35.8
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 0.0e+00 1151.7 2067 35.3
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1147.9 2073 35.5
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1141.3 2070 35.4
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 0.0e+00 1137.9 2074 36.1
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1137.5 2068 35.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1132.1 2068 35.3
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1129.4 2075 35.8
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 0.0e+00 1129.4 2052 36.9
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1127.1 2120 34.9
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1123.6 2079 35.5
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1120.5 2067 35.5
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1116.7 2068 34.9
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1116.7 2067 34.9
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1108.2 2075 35.2
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1107.4 2069 35.0
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1103.6 2067 34.6
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1100.5 2067 35.3
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1097.8 2104 34.4
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1096.6 2080 34.7
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1095.9 2077 34.5
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 0.0e+00 1092.8 2068 35.4
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1088.6 2062 34.7
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1087.8 2076 34.3
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1086.2 2079 34.5
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1084.7 2065 34.6
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1083.9 2074 34.1
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1082.8 2045 34.8
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 0.0e+00 1078.9 2122 33.3
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1078.2 2083 35.0
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 1.4e-311 1073.5 2066 34.2
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 1.3e-310 1070.8 2079 34.6
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 2.1e-310 1070.1 2092 33.7
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 2.1e-310 1070.1 2070 34.9
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 4.8e-310 1068.9 2079 34.7
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 1.8e-309 1067.0 2067 34.4
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 4.0e-309 1065.8 2068 34.3
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 6.9e-309 1065.1 2067 34.4
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 7.6e-308 1061.6 2072 33.4
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 2.7e-305 1053.1 2069 34.7
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 4.6e-305 1052.4 2087 34.1
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 1.8e-304 1050.4 2057 33.4
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 3.3e-303 1046.2 2061 33.9
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 2.2e-299 1033.5 1927 34.5
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 8.4e-299 1031.6 2067 33.5
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 1.4e-298 1030.8 2071 34.0
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 3.2e-298 1029.6 2057 33.7
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 1.2e-297 1027.7 2082 33.5
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 1.2e-297 1027.7 2075 34.0
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 5.1e-296 1022.3 2105 33.3
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 8.7e-296 1021.5 2074 33.6
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 2.5e-295 1020.0 2080 33.5
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 3.3e-295 1019.6 2062 33.4
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 3.3e-295 1019.6 2063 33.9
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 3.7e-294 1016.1 2057 33.4
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 4.8e-294 1015.8 2060 33.2
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 1.1e-293 1014.6 2069 33.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 2.0e-292 1010.4 2068 33.6
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 4.5e-292 1009.2 2074 33.4
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 2.9e-291 1006.5 2063 32.9
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 1.1e-290 1004.6 2076 33.3
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 1.9e-290 1003.8 2213 31.8
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 1.2e-289 1001.1 2060 33.3
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 3.5e-289 999.6 2078 33.3
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 3.5e-289 999.6 2053 32.5
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 3.5e-289 999.6 2065 33.8
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 2.3e-288 996.9 2066 33.3
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 3.0e-288 996.5 2167 32.3
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 6.7e-288 995.3 2064 33.2
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 1.9e-287 993.8 2059 32.2
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 9.7e-287 991.5 2059 33.5
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 2.2e-286 990.3 2076 33.4
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 3.7e-286 989.6 2061 33.2
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 4.8e-286 989.2 2078 33.3
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 1.5e-284 984.2 2061 33.2
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 2.0e-284 983.8 2077 33.0
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 2.5e-282 976.9 2055 32.7
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 3.2e-282 976.5 2074 33.1
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 2.1e-281 973.8 2092 33.6
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 2.7e-281 973.4 2064 32.8
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 1.0e-280 971.5 2085 32.8
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 3.0e-280 969.9 2107 31.8
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 2.4e-277 960.3 2006 32.6
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 6.9e-277 958.7 2504 30.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 7.7e-276 955.3 2061 32.4
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 5.1e-272 942.6 2017 32.8
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 8.8e-272 941.8 2071 31.7
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 1.0e-267 928.3 1962 32.4
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 2.2e-262 910.6 2078 32.5
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 3.7e-262 909.8 2066 32.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 2.3e-256 890.6 1938 32.1
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 5.3e-253 879.4 2074 31.7
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.2e-249 868.2 2062 31.0
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 1.2e-247 861.7 2011 31.9
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 3.3e-218 763.8 1842 29.8
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 2.5e-202 711.1 1451 34.3
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 6.4e-198 696.4 1743 30.4
SEGI_04376 Sequoiadendron giganteum HOM05D001072 ORTHO05D006807 2.5e-186 657.9 1062 38.4
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 1.2e-180 639.0 1234 35.4
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 4.8e-169 600.5 1072 36.4
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 1.3e-161 575.9 941 37.4
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 6.3e-137 493.8 946 34.0
PGSC0003DMG401017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 1.0e-131 476.5 789 36.8
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 1.2e-127 463.0 1165 31.1
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 6.2e-108 397.5 1833 23.2
HPP92_011994 Vanilla planifolia HOM05D001072 ORTHO05D006807 8.9e-99 367.1 725 34.8
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 3.3e-93 348.6 1419 25.9
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 3.6e-76 292.0 551 34.5
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 8.7e-70 270.8 2227 22.6
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-65 256.9 675 31.1
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 3.0e-54 219.2 527 30.7
Dinv12247 Davidia involucrata HOM05D001072 ORTHO05D006807 1.1e-45 190.7 187 54.0
Psat0s2465g0160 Pisum sativum HOM05D001072 ORTHO05D006807 1.5e-45 190.3 166 54.2
Dinv12246 Davidia involucrata HOM05D001072 ORTHO05D006807 4.5e-42 178.7 261 35.2
unitig_0.g202 Utricularia gibba HOM05D001072 ORTHO05D006807 9.7e-37 161.0 328 36.0
MBI03_g13045_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 9.7e-29 134.4 135 55.6
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 1.7e-28 133.7 211 31.3
Psat4g121040 Pisum sativum HOM05D001072 ORTHO05D006807 1.3e-25 124.0 101 56.4
Ah.09g228980 Amaranthus hybridus HOM05D001072 ORTHO05D006807 2.0e-13 83.6 105 49.5
Psat3g023200 Pisum sativum HOM05D001072 ORTHO05D006807 3.4e-13 82.8 83 48.2
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 1.8e-11 77.0 64 50.0
TPR.G25341 Trifolium pratense HOM05D001072 ORTHO05D006807 3.1e-11 76.3 93 46.2
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 9.2e-11 74.7 64 50.0
Lj2A1095G45 Lonicera japonica HOM05D001072 ORTHO05D006807 5.9e-10 72.0 119 41.2
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 6.6e-09 68.6 77 44.2
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 6.8e-06 58.5 111 30.6


User provided reference genes

Program Settings