Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.1e-219 766.5 383 100.0
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.1e-90 337.0 275 56.4
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.8e-89 334.0 276 54.7
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 2.3e-89 333.6 324 52.5
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.2e-88 331.3 277 57.0
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 3.4e-88 329.7 292 52.1
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 3.7e-87 326.2 277 55.2
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 3.7e-87 326.2 277 55.2
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 4.9e-87 325.9 293 53.6
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 8.3e-87 325.1 390 44.4
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.1e-86 324.7 275 54.9
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.1e-86 324.7 277 55.6
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.9e-86 323.9 266 55.3
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 3.2e-86 323.2 326 48.2
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.1e-86 322.8 286 53.8
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 7.1e-86 322.0 277 56.0
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.2e-85 321.2 358 45.0
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.6e-85 320.9 293 53.6
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 2.1e-85 320.5 293 52.6
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 2.1e-85 320.5 327 49.8
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 2.7e-85 320.1 383 46.5
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.3e-84 317.8 293 52.6
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.3e-84 317.8 293 52.6
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.7e-84 317.4 293 53.2
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 1.7e-84 317.4 384 46.1
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.3e-84 317.0 293 51.9
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.3e-84 317.0 277 53.8
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.3e-84 317.0 277 54.2
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 2.3e-84 317.0 277 54.5
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 2.3e-84 317.0 277 54.2
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 5.1e-84 315.8 277 54.5
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 5.1e-84 315.8 319 50.5
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 6.6e-84 315.5 277 54.5
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 6.6e-84 315.5 299 51.5
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 6.6e-84 315.5 324 50.3
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.6e-84 315.5 324 50.3
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 8.6e-84 315.1 344 47.7
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 8.6e-84 315.1 276 54.0
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.1e-83 314.7 277 52.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 1.5e-83 314.3 277 54.2
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 1.5e-83 314.3 277 53.8
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 1.9e-83 313.9 277 54.5
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.9e-83 313.9 277 54.2
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 2.5e-83 313.5 277 54.2
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 2.5e-83 313.5 409 41.6
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 2.5e-83 313.5 335 46.3
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 4.3e-83 312.8 323 48.9
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 7.3e-83 312.0 291 51.9
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 7.3e-83 312.0 327 47.7
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 7.3e-83 312.0 305 50.8
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 9.5e-83 311.6 277 54.5
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.2e-82 311.2 277 53.8
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.6e-82 310.8 299 51.2
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.6e-82 310.8 299 51.2
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.6e-82 310.8 293 51.5
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 2.1e-82 310.5 277 53.8
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 3.6e-82 309.7 343 46.1
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.6e-82 309.7 296 51.7
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 3.6e-82 309.7 323 48.0
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 4.7e-82 309.3 301 51.5
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 1.1e-81 308.1 367 44.7
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.4e-81 307.8 329 47.1
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 3.1e-81 306.6 294 51.4
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 3.1e-81 306.6 295 52.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 6.8e-81 305.4 378 42.9
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 6.8e-81 305.4 255 58.8
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 8.9e-81 305.1 322 48.1
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 8.9e-81 305.1 276 51.1
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 1.2e-80 304.7 277 52.0
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 1.2e-80 304.7 326 48.8
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 1.2e-80 304.7 258 54.3
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 3.4e-80 303.1 405 42.7
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 5.8e-80 302.4 268 52.2
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 7.6e-80 302.0 276 51.4
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.3e-79 301.2 277 52.7
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.3e-79 301.2 323 46.4
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.7e-79 300.8 395 42.8
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 2.2e-79 300.4 302 49.0
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 2.9e-79 300.1 277 53.1
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 8.3e-79 298.5 317 46.4
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.9e-78 297.4 318 48.7
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.4e-78 297.0 326 47.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 3.2e-78 296.6 261 53.6
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 9.2e-78 295.0 299 50.5
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.6e-77 294.3 249 53.4
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 8.6e-76 288.5 452 38.3
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 1.5e-75 287.7 261 51.3
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.5e-75 287.7 292 49.0
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 7.3e-75 285.4 386 40.4
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 2.8e-74 283.5 275 50.9
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 3.6e-74 283.1 373 41.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 8.1e-74 282.0 402 40.0
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 2.0e-72 277.3 312 45.2
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 2.2e-71 273.9 218 56.9
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 2.9e-71 273.5 330 43.6
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.1e-69 267.3 327 43.1
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 1.0e-68 265.0 264 50.0
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.1e-68 262.7 239 53.6
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.1e-67 261.5 227 54.2
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 1.9e-67 260.8 414 37.9
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 5.6e-67 259.2 289 48.1
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.1e-66 257.3 222 54.5
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 4.0e-65 253.1 233 52.8
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.4e-62 244.6 322 40.7
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.9e-59 234.2 270 44.4
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.9e-59 234.2 216 53.2
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 1.6e-58 231.1 231 48.1
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.6e-58 229.9 223 51.1
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 9.0e-57 225.3 182 55.5
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 5.1e-44 183.0 415 29.2
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 6.7e-44 182.6 180 52.8
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.3e-42 178.3 207 43.5
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.5e-31 139.0 114 57.0
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 3.2e-30 137.1 113 54.9
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 7.4e-27 125.9 117 51.3
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.3e-26 125.2 296 29.1
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 5.5e-22 109.8 103 48.5
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 6.3e-18 96.3 101 47.5
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.8e-17 94.7 76 55.3
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.1e-17 94.0 77 55.8
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 2.0e-16 91.3 97 45.4
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 1.0e-15 89.0 119 40.3
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.3e-07 62.0 56 53.6
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.2e-07 61.2 57 50.9
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 8.5e-07 59.3 71 40.8
Cre08.g376500 Chlamydomonas reinhardtii HOM05D016293 ORTHO05D018978 3.2e-06 57.4 70 40.0


User provided reference genes

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