Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 2.5e-205 718.8 417 100.0
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 1.6e-148 530.0 419 74.9
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 5.2e-147 525.0 418 71.3
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 1.3e-145 520.4 425 71.1
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 1.4e-144 516.9 351 78.3
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 8.6e-142 507.7 344 78.8
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 4.3e-141 505.4 328 78.0
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 9.5e-141 504.2 297 83.2
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.2e-139 498.4 296 83.1
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 6.8e-139 498.0 294 80.6
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 2.0e-138 496.5 421 69.1
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.3e-137 493.8 344 72.4
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.2e-137 493.0 386 68.4
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 4.9e-137 491.9 294 81.0
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.4e-136 490.3 338 73.7
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.9e-136 490.0 361 71.5
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 3.2e-136 489.2 297 80.5
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 3.5e-135 485.7 357 70.3
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.0e-135 485.0 417 66.9
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.0e-134 484.2 347 71.2
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 1.3e-134 483.8 344 73.3
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 3.9e-134 482.3 415 66.0
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 6.6e-134 481.5 346 75.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 8.6e-134 481.1 348 69.8
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 1.5e-133 480.3 294 79.9
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 1.5e-133 480.3 294 79.9
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 5.6e-133 478.4 352 70.5
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 5.6e-133 478.4 379 68.9
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.2e-132 477.2 302 77.2
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 1.6e-132 476.9 417 66.2
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.6e-132 476.9 417 66.7
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 1.6e-132 476.9 330 71.8
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.1e-132 476.5 304 75.3
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.1e-132 476.5 327 73.7
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.8e-132 476.1 294 78.2
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 2.8e-132 476.1 296 78.4
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 3.6e-132 475.7 355 71.3
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 4.7e-132 475.3 304 76.0
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 6.2e-132 474.9 333 73.3
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 8.1e-132 474.6 303 77.6
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 1.4e-131 473.8 417 68.1
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 5.2e-131 471.9 285 79.6
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 8.9e-131 471.1 303 79.2
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 8.9e-131 471.1 346 72.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 8.9e-131 471.1 340 70.6
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 1.2e-130 470.7 419 61.3
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 2.0e-130 469.9 303 79.5
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 4.4e-130 468.8 302 78.5
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 4.4e-130 468.8 302 78.1
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 1.3e-129 467.2 302 75.5
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 3.8e-129 465.7 355 71.0
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 4.9e-129 465.3 302 75.5
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.4e-128 463.8 374 67.6
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 1.9e-128 463.4 335 70.1
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 9.2e-128 461.1 267 83.5
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.2e-127 460.7 340 72.1
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.2e-127 460.7 340 72.1
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.2e-127 460.7 353 68.8
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 4.6e-127 458.8 343 70.8
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 1.0e-126 457.6 302 74.8
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 3.9e-126 455.7 365 66.6
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 3.9e-126 455.7 332 68.7
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 4.3e-125 452.2 289 76.1
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.6e-124 450.3 422 66.4
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 2.8e-124 449.5 351 64.1
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 6.2e-124 448.4 419 60.1
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 6.2e-124 448.4 340 68.2
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 6.2e-124 448.4 505 56.8
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.4e-123 447.2 418 62.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.8e-123 446.8 395 61.5
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 4.4e-122 442.2 330 70.0
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 5.8e-122 441.8 447 56.2
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 1.7e-121 440.3 335 66.9
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.6e-119 433.7 260 80.0
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.1e-117 427.6 402 57.0
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 1.5e-117 427.2 382 59.9
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 1.3e-116 424.1 274 75.2
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 6.9e-115 418.3 331 65.0
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.7e-113 413.7 347 62.0
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 1.9e-112 410.2 260 79.6
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 1.2e-111 407.5 330 65.8
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.6e-111 407.1 245 80.0
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 2.7e-111 406.4 330 63.9
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 2.7e-111 406.4 322 65.8
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 4.6e-111 405.6 282 73.4
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 5.1e-110 402.1 298 74.5
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.9e-109 400.2 305 65.6
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 2.1e-108 396.7 306 65.4
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 3.1e-107 392.9 355 59.2
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 4.0e-107 392.5 352 61.4
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 3.4e-106 389.4 356 61.2
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.1e-104 384.4 334 60.2
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.9e-104 383.6 337 60.5
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 2.1e-103 380.2 311 67.8
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.9e-101 373.6 269 73.6
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 7.4e-101 371.7 221 82.8
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.1e-99 367.9 216 82.4
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 5.3e-99 365.5 222 81.1
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.3e-97 360.9 222 80.2
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 2.4e-91 340.1 330 58.2
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.6e-90 336.7 256 73.8
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.5e-88 330.1 281 57.3
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.4e-83 313.5 355 47.6
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.5e-82 310.8 277 54.2
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.6e-79 299.7 251 61.0
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 6.9e-75 285.4 184 77.7
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.3e-73 281.2 351 43.9
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 7.2e-64 248.8 296 46.6
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 2.3e-62 243.8 183 68.3
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 1.2e-61 241.5 246 48.0
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.1e-55 219.2 354 42.9
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.4e-51 208.0 271 41.3
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.0e-49 201.8 114 79.8
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 8.6e-49 198.7 113 82.3
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.8e-47 193.7 121 79.3
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 3.1e-43 180.3 385 29.1
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 4.6e-34 149.8 103 68.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.7e-33 147.9 101 75.2
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 8.9e-30 135.6 91 67.0
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 4.4e-29 133.3 77 77.9
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.9e-28 130.6 77 75.3
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.2e-26 125.2 76 73.7
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.5e-24 118.2 102 61.8
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.3e-24 117.1 82 76.8
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 4.3e-24 116.7 126 57.1
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 6.0e-18 96.3 98 53.1
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 2.3e-17 94.4 127 47.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 1.1e-14 85.5 79 57.0
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 6.8e-14 82.8 56 71.4
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 3.3e-08 63.9 265 29.1
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 6.2e-07 59.7 88 35.2
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 9.0e-06 55.8 128 27.3


User provided reference genes

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