Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.1e-147 525.8 964 100.0
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.3e-92 345.5 197 83.2
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.2e-90 339.0 197 82.2
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.6e-88 331.3 197 79.7
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 8.2e-87 326.2 198 79.3
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 8.2e-87 326.2 186 80.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.1e-86 325.9 193 79.8
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.4e-86 324.7 191 80.1
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.4e-86 324.7 199 77.9
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.1e-86 324.3 197 76.1
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 4.1e-86 323.9 194 78.9
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.2e-85 322.4 195 77.4
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.6e-85 321.2 197 75.6
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.4e-85 320.9 193 76.2
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 3.4e-85 320.9 193 76.2
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.4e-85 320.9 186 81.7
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.0e-84 319.3 189 77.8
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.9e-84 317.8 193 75.6
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 3.8e-84 317.4 198 75.8
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.8e-84 317.4 193 75.6
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.5e-84 316.6 193 75.6
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.1e-83 315.8 188 77.1
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.4e-83 315.5 188 77.7
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.4e-83 315.5 202 74.8
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.4e-83 315.5 195 76.4
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.9e-83 315.1 186 79.0
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 3.2e-83 314.3 188 76.6
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 4.2e-83 313.9 186 76.3
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 7.2e-83 313.2 195 74.9
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 7.2e-83 313.2 195 75.4
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.2e-82 312.4 195 75.4
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.2e-82 312.4 186 78.0
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.2e-82 312.4 198 75.8
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.2e-82 312.4 195 72.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 6.1e-82 310.1 195 73.8
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.0e-81 309.3 195 74.4
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.8e-81 308.5 190 74.2
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 3.0e-81 307.8 195 74.4
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 3.0e-81 307.8 195 73.8
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 3.9e-81 307.4 205 72.2
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 6.7e-81 306.6 191 74.9
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 8.8e-81 306.2 195 75.9
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.1e-80 305.8 198 70.2
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.5e-80 305.4 189 75.1
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.5e-80 305.4 189 75.1
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.6e-80 304.7 193 76.2
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 5.7e-80 303.5 190 74.7
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 5.7e-80 303.5 193 75.1
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 5.7e-80 303.5 199 72.9
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 9.7e-80 302.8 188 76.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.3e-79 302.4 193 74.6
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.3e-79 302.4 191 72.8
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.2e-79 301.6 195 73.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.2e-79 301.6 201 69.2
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.2e-79 301.6 193 74.1
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 2.2e-79 301.6 190 76.3
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.8e-79 301.2 196 73.5
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.8e-79 301.2 193 74.6
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.8e-79 301.2 193 74.6
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.8e-79 301.2 186 74.7
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.8e-79 301.2 194 74.7
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 8.2e-79 299.7 190 75.3
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.1e-78 299.3 189 75.7
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.8e-78 298.5 195 71.3
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.1e-78 297.4 189 75.1
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 5.3e-78 297.0 189 75.7
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 5.3e-78 297.0 185 77.8
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 7.0e-78 296.6 186 74.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 3.5e-77 294.3 190 73.2
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.2e-76 291.6 195 71.3
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.2e-76 291.6 195 69.7
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 4.2e-75 287.3 193 69.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.4e-73 282.3 201 71.1
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.4e-73 282.3 196 70.9
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 3.0e-73 281.2 201 71.1
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.6e-72 278.1 196 69.9
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 2.6e-72 278.1 190 72.6
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 3.3e-72 277.7 190 72.6
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.3e-71 275.8 190 72.1
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.2e-71 275.0 191 71.7
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 2.2e-71 275.0 202 68.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.8e-71 274.6 198 66.2
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 2.8e-71 274.6 190 71.6
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 3.7e-71 274.2 186 72.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 2.4e-70 271.6 198 65.2
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 9.1e-70 269.6 195 66.2
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 4.5e-69 267.3 185 67.0
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.5e-67 261.5 188 66.5
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.4e-67 259.6 193 65.8
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 8.8e-65 253.1 188 64.9
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 7.0e-62 243.4 185 61.1
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 9.1e-62 243.0 185 62.2
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 5.9e-61 240.4 150 74.7
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.0e-60 239.6 151 74.8
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.7e-60 238.8 208 59.1
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 5.0e-60 237.3 187 61.0
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 9.5e-59 233.0 138 78.3
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 2.1e-58 231.9 140 77.9
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.0e-57 229.6 165 65.5
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 3.1e-49 201.4 123 78.0
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 2.9e-47 194.9 124 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 3.7e-47 194.5 199 48.2
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.1e-46 193.0 136 66.2
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 1.0e-44 186.4 200 48.0
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 3.9e-44 184.5 181 45.3
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.6e-36 157.1 181 44.8
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.9e-35 155.6 181 44.8
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 1.4e-30 139.4 105 69.5
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 4.1e-30 137.9 189 42.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 7.1e-30 137.1 182 37.4
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.7e-28 132.5 197 38.6
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.0e-28 131.7 119 60.5
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 7.3e-27 127.1 113 59.3
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.2e-26 126.3 78 76.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.2e-26 126.3 78 75.6
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.6e-26 125.9 111 58.6
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.1e-26 125.6 109 61.5
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 2.8e-26 125.2 121 53.7
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.6e-26 124.8 77 76.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 8.1e-26 123.6 107 57.0
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.1e-25 121.7 76 65.8
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 5.2e-25 120.9 88 68.2
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-24 119.8 77 70.1
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-24 119.8 114 57.0
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 7.6e-24 117.1 115 55.7
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.1e-22 113.2 113 56.6
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 4.2e-22 111.3 85 62.4
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.1e-21 109.0 103 57.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.4e-14 86.3 56 67.9
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.9e-14 85.9 69 65.2
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.0e-12 80.1 159 29.6
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.3e-12 79.0 81 54.3
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.5e-11 76.3 39 89.7
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 8.1e-10 70.5 48 68.8
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 9.0e-09 67.0 83 48.2
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.6e-08 65.5 125 34.4
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 7.6e-08 63.9 155 29.7
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 9.9e-08 63.5 42 71.4
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 4.9e-07 61.2 160 28.1
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 1.1e-06 60.1 171 30.4
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.4e-06 59.7 87 34.5
Lalb_Chr17g0348741 Lupinus albus HOM05D000285 ORTHO05D000241 1.4e-06 59.7 78 39.7
Hund23136 Selenicereus undatus HOM05D000285 ORTHO05D000241 1.4e-06 59.7 77 39.0
Zm00001eb110100 Zea mays HOM05D000142 ORTHO05D001253 1.4e-06 59.7 90 35.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.9e-06 59.3 39 69.2
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.9e-06 59.3 39 69.2
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 2.4e-06 58.9 204 28.9
Peaxi162Scf00449g00513 Petunia axillaris HOM05D000285 ORTHO05D000241 2.4e-06 58.9 75 37.3
Sp6g17440 Schrenkiella parvula HOM05D000285 ORTHO05D000241 2.4e-06 58.9 77 40.3
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 3.2e-06 58.5 160 26.9
Os03g0681900 Oryza sativa ssp. japonica HOM05D003978 ORTHO05D006033 3.2e-06 58.5 81 38.3
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 3.2e-06 58.5 166 30.1
unitig_85.g27337 Utricularia gibba HOM05D000285 ORTHO05D000241 3.2e-06 58.5 87 36.8
unitig_85.g27340 Utricularia gibba HOM05D000285 ORTHO05D000241 3.2e-06 58.5 87 36.8
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 4.2e-06 58.2 204 28.4
Zm00001eb116460 Zea mays HOM05D000285 ORTHO05D000241 4.2e-06 58.2 94 36.2
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 5.4e-06 57.8 171 31.6
Thhalv10013607m.g Eutrema salsugineum HOM05D000285 ORTHO05D000241 5.4e-06 57.8 77 40.3
THA.LOC104817697 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 5.4e-06 57.8 86 39.5
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 5.4e-06 57.8 160 26.2
unitig_26.g8808 Utricularia gibba HOM05D000111 ORTHO05D007645 5.4e-06 57.8 108 35.2
arahy.Tifrunner.gnm1.ann1.M41V37 Arachis hypogaea HOM05D000142 ORTHO05D001253 7.1e-06 57.4 90 37.8
Glyma.05G043200 Glycine max HOM05D000142 ORTHO05D001253 7.1e-06 57.4 93 38.7
THA.LOC104813442 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 7.1e-06 57.4 77 40.3
Zm00001eb302580 Zea mays HOM05D000285 ORTHO05D000241 7.1e-06 57.4 94 35.1
Aa31LG5G12290 Aethionema arabicum HOM05D000285 ORTHO05D001781 9.3e-06 57.0 92 35.9
EL10Ac7g18026 Beta vulgaris HOM05D000142 ORTHO05D001253 9.3e-06 57.0 90 37.8
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 9.3e-06 57.0 156 28.2
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 9.3e-06 57.0 165 27.3
Migut.G00576 Erythranthe guttata HOM05D000142 ORTHO05D008707 9.3e-06 57.0 86 34.9
Phvul.008G153800 Phaseolus vulgaris HOM05D000285 ORTHO05D000241 9.3e-06 57.0 104 30.8
Solyc04g014820.4 Solanum lycopersicum HOM05D000285 ORTHO05D000241 9.3e-06 57.0 77 39.0
Sopen04g006950 Solanum pennellii HOM05D000285 ORTHO05D000241 9.3e-06 57.0 77 39.0
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 9.3e-06 57.0 166 28.3
THA.LOC104825320 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 9.3e-06 57.0 86 34.9
TWI53G1090 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 9.3e-06 57.0 93 35.5
unitig_62.g23292 Utricularia gibba HOM05D000285 ORTHO05D000241 9.3e-06 57.0 77 37.7
Zm00001eb302640 Zea mays HOM05D000285 ORTHO05D000241 9.3e-06 57.0 77 40.3


User provided reference genes

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