Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1692.9 870 100.0
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1415.6 870 82.2
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1402.9 865 80.5
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1400.6 862 80.5
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1399.0 861 81.9
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1398.3 862 80.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1398.3 862 80.4
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1387.1 864 79.5
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1375.1 861 78.9
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1370.1 862 81.4
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1364.4 861 78.4
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1364.4 862 81.0
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1362.8 862 80.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1361.7 866 78.4
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1359.7 868 78.0
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1359.4 862 80.0
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1359.0 873 78.5
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1357.4 863 79.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1349.3 864 79.2
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1347.8 879 76.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1342.8 859 79.6
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1340.5 895 75.4
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1338.9 862 76.7
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1337.0 863 77.4
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1334.7 865 76.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1332.8 861 79.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1331.2 861 76.7
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1330.9 885 77.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1330.1 868 78.5
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1321.2 866 76.7
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1319.7 864 76.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1315.8 868 76.3
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1313.1 865 75.1
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1310.4 865 76.3
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1310.4 866 74.8
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1309.7 860 75.6
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1307.0 871 73.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1303.1 863 75.4
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1302.3 863 76.4
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1297.3 865 73.6
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1295.0 866 73.8
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1294.6 865 73.4
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 866 76.1
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1290.8 831 77.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1286.2 864 74.4
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1284.2 863 75.6
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1282.3 866 74.2
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1278.1 865 73.8
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 863 73.1
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1271.9 865 75.1
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 865 75.3
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 863 74.5
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1266.1 862 72.7
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1258.0 837 76.1
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1252.3 865 74.2
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1248.4 865 74.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1246.5 879 72.7
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1245.7 929 68.9
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1238.4 864 70.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1236.1 923 69.2
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1233.4 864 72.2
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1232.2 858 71.8
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1229.5 862 70.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1228.4 864 69.8
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1228.4 862 70.5
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1228.0 863 71.4
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 863 71.0
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 864 69.9
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1227.2 861 72.2
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1225.7 864 69.8
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1225.7 864 69.7
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1225.3 864 69.9
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 864 69.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1224.2 860 70.1
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1222.6 864 69.8
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1219.5 862 70.0
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1218.8 864 69.8
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1213.7 859 71.8
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1206.8 859 71.6
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1206.4 1007 63.6
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1203.3 866 71.2
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1199.5 911 66.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1197.6 875 69.4
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1185.2 864 67.8
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1183.3 961 67.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1181.4 869 67.4
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1164.8 863 68.3
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1163.3 898 67.8
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1161.4 949 64.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1146.3 792 74.2
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1135.9 873 64.7
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1109.0 868 63.7
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 0.0e+00 1082.4 749 74.2
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 3.5e-310 1068.1 694 77.7
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 1.1e-308 1063.1 891 62.3
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.2e-307 1059.7 793 70.4
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.9e-292 1009.2 645 77.4
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.5e-270 935.3 624 76.6
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 2.1e-267 926.0 879 52.3
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 5.4e-263 911.4 874 52.3
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 3.3e-260 902.1 873 51.1
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 3.5e-230 802.4 877 46.4
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.4e-218 763.1 494 77.9
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.3e-216 757.3 879 49.9
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 1.4e-215 753.8 556 68.2
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.5e-214 749.2 584 67.8
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 3.1e-194 682.9 964 40.8
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.8e-189 667.2 487 69.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 3.7e-187 659.4 856 45.9
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 1.0e-181 641.3 482 64.3
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 2.6e-180 636.7 445 71.9
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.6e-177 627.5 382 78.8
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.4e-173 614.4 501 61.5
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.3e-143 513.1 328 76.8
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.1e-141 506.9 615 48.0
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.9e-128 463.4 378 61.6
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 2.7e-89 334.3 388 51.0
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 3.9e-88 330.5 237 67.5
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 2.0e-84 318.2 162 91.4
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 3.1e-69 267.7 628 28.7
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.6e-57 227.6 650 27.8
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 3.7e-46 191.0 157 63.7
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 8.6e-35 153.3 537 25.7
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.5e-34 149.8 129 56.6
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.6e-33 149.1 127 58.3
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 3.6e-33 147.9 155 49.0
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 3.1e-32 144.8 97 72.2
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.2e-29 134.8 120 56.7
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 2.5e-26 125.2 649 20.6
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.5e-23 115.9 117 53.0
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.3e-18 98.2 131 42.0
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.7e-17 94.4 42 97.6
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 1.5e-15 89.4 89 48.3
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 3.6e-09 68.2 47 72.3
Sabra16G0154900 Salix brachista HOM05D005600 ORTHO05D349220 1.5e-07 62.8 42 64.3
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.2e-06 58.9 28 89.3
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 2.9e-06 58.5 85 44.7


User provided reference genes

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