Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 7.0e-201 703.7 358 100.0
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 2.3e-167 592.4 358 82.7
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.5e-166 589.7 358 82.7
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 8.1e-165 583.9 362 80.9
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.4e-164 582.4 358 81.0
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 1.3e-162 576.6 358 79.3
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.3e-162 576.6 373 77.2
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 3.8e-162 575.1 358 78.5
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.4e-161 573.2 373 77.5
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 9.3e-161 570.5 373 76.1
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 2.7e-160 568.9 358 79.3
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.7e-160 568.9 359 79.1
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 7.9e-160 567.4 373 76.4
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.0e-159 567.0 360 78.3
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 3.0e-159 565.5 358 77.4
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 3.0e-159 565.5 359 79.7
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 8.7e-159 563.9 370 77.6
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.9e-158 562.8 358 78.8
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.8e-157 558.9 370 76.8
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 2.8e-157 558.9 371 77.4
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 1.1e-156 557.0 364 76.9
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 3.1e-156 555.4 391 74.7
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 6.9e-156 554.3 370 75.4
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 2.6e-155 552.4 368 74.7
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 5.8e-155 551.2 358 76.5
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 2.2e-154 549.3 373 74.5
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 2.2e-154 549.3 359 76.9
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 2.9e-154 548.9 373 73.7
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 3.8e-154 548.5 370 75.1
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 8.4e-154 547.4 373 73.5
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 4.2e-153 545.0 358 75.7
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 1.6e-152 543.1 358 75.7
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 2.7e-152 542.3 359 74.9
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 6.0e-152 541.2 364 72.8
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 1.3e-151 540.0 362 74.6
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 1.8e-151 539.7 365 74.2
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.8e-151 539.7 374 73.0
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 5.1e-151 538.1 365 74.0
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 8.7e-151 537.3 367 74.1
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 8.7e-151 537.3 359 75.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 1.5e-150 536.6 366 72.1
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-150 536.6 366 72.1
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.5e-150 536.6 361 75.1
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.9e-150 536.2 361 74.0
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.9e-150 536.2 366 72.1
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.9e-150 536.2 366 72.1
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 2.5e-150 535.8 366 72.1
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 4.3e-150 535.0 367 72.8
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 7.4e-150 534.3 358 74.6
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 1.3e-149 533.5 364 72.5
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 1.3e-149 533.5 359 73.5
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 8.2e-149 530.8 361 75.1
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 8.2e-149 530.8 377 71.6
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 1.8e-148 529.6 360 74.4
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 5.3e-148 528.1 364 72.0
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 5.3e-148 528.1 364 72.0
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 6.9e-148 527.7 366 71.9
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.2e-147 526.9 365 71.2
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 1.5e-147 526.6 372 69.9
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 3.4e-147 525.4 371 69.8
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 5.8e-147 524.6 371 69.8
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 5.8e-147 524.6 379 69.4
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 7.6e-147 524.2 361 73.4
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 1.0e-146 523.9 371 70.1
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 1.7e-146 523.1 366 71.0
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.7e-146 523.1 360 74.2
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 1.2e-144 516.9 360 72.5
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 2.7e-144 515.8 358 72.9
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 4.6e-144 515.0 382 69.4
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 7.9e-144 514.2 368 70.7
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 1.8e-143 513.1 345 73.0
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 1.5e-142 510.0 361 71.7
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 1.9e-142 509.6 366 69.7
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 4.3e-142 508.4 379 67.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 1.6e-141 506.5 374 68.2
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 4.8e-141 505.0 376 68.1
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 4.1e-140 501.9 358 70.7
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 9.0e-140 500.7 382 66.0
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 9.0e-140 500.7 359 68.5
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 1.2e-139 500.4 382 66.0
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 4.5e-139 498.4 362 69.9
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 7.6e-139 497.7 362 69.9
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 7.6e-139 497.7 363 69.7
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 7.6e-139 497.7 365 67.9
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 1.3e-138 496.9 359 69.1
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 2.9e-138 495.7 361 68.7
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 3.8e-138 495.4 361 69.5
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 3.8e-138 495.4 365 67.4
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 6.5e-138 494.6 360 68.9
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 1.4e-137 493.4 376 66.8
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 3.6e-136 488.8 360 67.8
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 3.9e-135 485.3 362 68.5
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 5.7e-134 481.5 353 68.6
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 5.7e-134 481.5 362 67.4
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 9.7e-134 480.7 312 76.0
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 2.2e-133 479.6 362 66.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 4.8e-133 478.4 360 66.7
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 6.3e-133 478.0 360 67.2
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 1.8e-132 476.5 351 71.2
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 2.4e-132 476.1 359 67.1
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 4.1e-132 475.3 354 66.7
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 2.6e-131 472.6 360 66.4
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 2.6e-131 472.6 360 65.6
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 5.9e-131 471.5 360 65.8
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 2.2e-130 469.5 306 77.1
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.5e-129 466.1 361 68.4
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 4.2e-129 465.3 360 64.2
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.3e-127 459.5 359 65.5
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 2.6e-126 456.1 382 62.6
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 4.4e-126 455.3 359 63.5
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 2.2e-125 453.0 300 79.0
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.8e-124 449.9 345 69.3
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 5.3e-124 448.4 360 61.9
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.4e-121 440.3 341 64.8
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 5.3e-116 421.8 363 60.6
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.3e-116 421.8 312 68.9
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-115 420.2 312 68.3
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 1.9e-113 413.3 387 54.3
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 3.1e-108 396.0 370 58.4
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 2.7e-104 382.9 293 66.2
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 4.8e-101 372.1 272 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 6.3e-101 371.7 356 54.5
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 1.3e-98 364.0 302 60.6
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.9e-82 309.3 189 84.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.4e-70 269.6 162 85.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.7e-69 267.3 374 42.8
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.7e-69 267.3 161 82.0
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 2.1e-67 260.4 258 55.4
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 1.9e-65 253.8 259 50.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.0e-62 243.8 327 45.9
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 7.1e-60 235.3 234 53.0
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.4e-55 221.1 161 70.8
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 4.4e-54 216.1 329 37.1
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.6e-51 207.6 167 65.3
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 1.0e-50 204.9 181 56.4
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.5e-49 200.3 175 61.7
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.9e-44 184.1 228 45.6
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 1.2e-38 164.9 133 68.4
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 2.6e-38 163.7 133 67.7
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 5.8e-38 162.5 157 53.5
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 1.1e-31 141.7 121 64.5
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 3.1e-31 140.2 81 86.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.0e-26 123.6 93 62.4
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 1.1e-23 115.2 84 71.4
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.2e-22 111.7 113 54.0
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.4e-18 98.2 201 37.3
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.3e-15 86.3 51 80.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 5.3e-15 86.3 51 80.4
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 6.9e-15 85.9 95 53.7


User provided reference genes

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