Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.4e-200 703.0 416 100.0
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 5.2e-171 604.7 432 80.3
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 4.7e-148 528.5 515 63.3
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 5.2e-147 525.0 435 74.5
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 1.1e-112 411.0 330 69.7
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 3.2e-112 409.5 332 65.1
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 4.6e-111 405.6 331 64.0
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 7.8e-111 404.8 348 62.4
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 2.3e-110 403.3 352 60.2
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 5.1e-110 402.1 433 56.6
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 9.6e-109 397.9 339 63.1
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 2.1e-108 396.7 356 60.1
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.8e-107 393.7 331 61.6
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 2.4e-107 393.3 339 61.9
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 3.1e-107 392.9 344 60.2
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 6.9e-107 391.7 347 60.5
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 9.0e-107 391.3 344 66.9
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 1.5e-106 390.6 361 58.7
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 3.4e-106 389.4 328 62.5
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 5.8e-106 388.7 358 57.5
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 7.6e-106 388.3 358 58.7
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 7.6e-106 388.3 361 58.2
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 7.6e-106 388.3 352 62.8
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.3e-105 387.5 359 58.5
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 2.2e-105 386.7 322 60.9
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 2.2e-105 386.7 322 60.9
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.2e-105 386.7 344 59.6
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.2e-105 386.7 344 59.6
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 2.9e-105 386.3 322 62.7
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 3.8e-105 386.0 356 56.7
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 4.9e-105 385.6 321 59.8
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 8.4e-105 384.8 335 60.9
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.9e-104 383.6 327 61.2
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 3.2e-104 382.9 353 57.5
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.2e-104 382.5 344 59.0
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 7.1e-104 381.7 332 60.2
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 7.1e-104 381.7 322 62.1
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 9.3e-104 381.3 333 60.4
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.2e-103 380.9 330 60.3
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 1.2e-103 380.9 334 60.2
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 2.7e-103 379.8 322 60.9
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 3.5e-103 379.4 313 61.7
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 6.0e-103 378.6 349 57.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 7.9e-103 378.3 330 59.7
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 1.0e-102 377.9 332 59.9
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 1.0e-102 377.9 332 59.9
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.0e-102 377.9 311 62.1
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.8e-102 377.1 358 57.5
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 2.3e-102 376.7 327 61.2
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 3.0e-102 376.3 354 58.8
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 3.0e-102 376.3 334 58.7
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.9e-102 375.9 320 61.6
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 3.9e-102 375.9 347 56.8
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 5.1e-102 375.6 341 58.9
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 5.1e-102 375.6 334 58.4
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 5.1e-102 375.6 431 50.1
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 5.1e-102 375.6 353 56.4
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 2.5e-101 373.2 351 57.3
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 3.3e-101 372.9 338 59.8
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 3.3e-101 372.9 328 59.5
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 7.4e-101 371.7 333 59.8
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 7.4e-101 371.7 383 55.6
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 9.6e-101 371.3 313 61.3
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 9.6e-101 371.3 354 56.5
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 1.6e-100 370.5 336 56.8
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.6e-100 369.4 435 49.9
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 2.4e-99 366.7 252 70.6
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 3.1e-99 366.3 391 52.9
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 4.0e-99 365.9 358 56.1
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 5.3e-99 365.5 325 59.4
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.2e-98 364.4 298 63.1
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 2.6e-98 363.2 337 58.2
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 3.4e-98 362.8 327 59.6
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 9.9e-98 361.3 249 71.1
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 3.8e-97 359.4 306 66.0
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 8.4e-97 358.2 335 54.0
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.9e-96 357.1 345 55.7
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 9.3e-96 354.8 318 63.5
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 6.0e-95 352.1 337 57.0
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 3.0e-94 349.7 333 57.4
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 7.4e-93 345.1 335 52.2
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 1.8e-91 340.5 384 49.2
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 4.0e-91 339.3 416 48.6
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 9.0e-91 338.2 316 57.0
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 1.2e-90 337.8 287 60.6
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 2.6e-90 336.7 404 46.5
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.7e-89 334.0 352 52.0
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 5.5e-88 328.9 338 53.6
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 5.5e-88 328.9 346 52.0
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 9.3e-88 328.2 312 55.4
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 3.9e-86 322.8 256 68.4
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 5.1e-86 322.4 330 53.3
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 8.7e-86 321.6 311 55.3
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 2.9e-81 306.6 222 69.4
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 3.8e-81 306.2 222 69.4
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 3.6e-79 299.7 349 48.4
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 1.5e-74 284.3 279 55.9
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.0e-74 283.9 354 43.8
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.9e-73 280.0 356 43.5
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 5.1e-70 269.2 274 54.0
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 1.5e-69 267.7 251 54.2
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 7.4e-69 265.4 243 56.4
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 2.8e-68 263.5 330 43.6
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.4e-66 256.5 260 54.2
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.6e-61 240.4 347 39.5
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.7e-60 237.7 324 42.3
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.7e-57 227.6 235 54.0
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 6.3e-52 209.1 254 42.5
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 6.5e-49 199.1 113 82.3
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 5.5e-48 196.1 199 53.3
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 6.1e-47 192.6 117 73.5
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 4.4e-45 186.4 181 54.7
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 2.4e-43 180.6 258 38.0
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.0e-38 165.2 350 38.9
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 2.0e-37 161.0 385 27.5
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 2.4e-35 154.1 152 53.3
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.5e-32 144.8 103 64.1
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 4.7e-31 139.8 77 83.1
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 1.4e-30 138.3 89 73.0
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 1.5e-29 134.8 101 67.3
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 2.9e-28 130.6 76 77.6
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 8.3e-20 102.4 156 41.0
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.5e-18 97.1 101 54.5
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 6.2e-15 86.3 54 75.9
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 6.8e-14 82.8 139 36.7
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.4e-13 80.5 115 42.6
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 3.9e-09 67.0 112 38.4
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 1.9e-08 64.7 242 23.6
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 5.6e-08 63.2 46 65.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 3.6e-07 60.5 143 30.8


User provided reference genes

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