Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1681.8 865 100.0
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1650.2 862 97.9
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1540.8 867 89.7
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1340.9 865 76.2
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1320.4 866 74.9
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1319.7 866 78.5
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 866 77.6
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 866 78.3
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1317.8 865 76.5
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 866 78.2
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 861 77.0
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 862 77.8
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1306.2 861 77.5
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 865 73.4
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1304.3 874 73.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1303.9 862 74.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1297.7 863 75.6
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1295.8 865 73.2
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1293.1 887 75.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1289.2 866 72.4
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1285.0 862 75.5
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1284.6 865 76.1
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1283.1 862 73.1
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1283.1 865 73.4
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1281.2 883 71.5
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1280.4 899 70.6
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1280.4 862 72.9
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1278.1 865 73.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1276.9 861 72.7
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1272.7 862 72.4
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 861 72.4
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 861 72.4
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1269.2 865 72.0
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1268.4 831 75.9
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1266.5 865 75.1
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1263.4 868 72.8
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1258.4 862 75.1
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1258.0 862 71.1
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1257.3 863 71.3
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1256.5 865 74.9
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1255.0 864 72.0
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1254.2 865 71.6
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1253.8 863 71.3
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 866 74.0
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1253.4 866 71.0
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1252.7 865 74.8
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1250.3 863 70.8
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1245.3 867 71.9
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1243.4 861 71.1
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1240.7 861 70.0
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1239.9 867 71.2
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1236.9 864 70.5
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1236.1 862 71.1
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1235.3 839 74.3
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1234.2 861 70.3
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1215.7 863 72.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1210.3 875 71.7
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1208.0 861 72.1
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1201.8 861 69.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1200.3 924 69.0
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1194.5 929 65.3
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1192.6 859 71.5
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1191.0 864 72.3
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1182.9 860 67.2
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1181.0 865 68.1
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1177.5 860 66.6
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1177.2 860 66.9
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1177.2 863 66.4
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1176.0 860 66.6
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1172.9 862 69.0
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1171.8 863 66.3
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1171.4 860 66.6
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1171.0 860 66.5
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1170.6 867 67.6
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1169.5 860 66.4
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1168.7 863 66.5
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 860 66.4
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1167.9 860 66.4
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1161.7 863 65.9
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1161.7 865 66.9
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1161.4 873 66.4
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1159.4 1007 60.5
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1153.3 907 63.5
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 0.0e+00 1152.5 629 94.8
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1139.0 860 67.6
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1135.9 860 64.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1134.0 869 64.2
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1117.4 952 61.6
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1106.3 878 62.2
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1101.7 783 71.5
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1100.5 892 63.8
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 6.0e-307 1057.4 865 60.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.9e-305 1052.4 942 62.8
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.8e-304 1047.7 793 70.6
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 2.0e-297 1025.8 695 73.1
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 4.3e-297 1024.6 890 60.2
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.7e-296 1022.7 750 71.2
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 2.4e-279 965.7 650 73.1
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.5e-270 934.9 880 52.6
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 2.0e-262 909.4 879 52.7
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.3e-261 906.7 873 51.8
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 6.8e-226 788.1 874 45.3
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.2e-214 750.7 882 50.6
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 4.0e-210 735.7 563 67.0
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 4.8e-203 712.2 584 64.2
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.2e-201 707.6 959 42.5
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.2e-199 699.1 495 70.7
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 2.5e-180 636.7 486 66.9
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 8.2e-179 631.7 847 43.9
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 3.4e-177 626.3 381 76.6
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 5.9e-169 599.0 481 60.1
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 8.5e-168 595.1 443 66.4
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.5e-167 594.3 501 59.1
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 5.9e-145 519.2 327 75.5
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 7.3e-127 459.1 378 61.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.7e-123 446.8 614 43.0
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.2e-117 426.4 236 89.4
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 6.5e-83 313.2 168 87.5
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 1.4e-77 295.4 387 45.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 3.5e-73 280.8 614 30.0
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 3.0e-64 251.1 648 28.9
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.6e-52 212.2 216 52.3
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 1.3e-35 156.0 545 26.8
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 8.5e-35 153.3 129 58.1
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 1.0e-32 146.4 120 60.0
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-32 146.0 125 58.4
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.9e-30 137.5 655 20.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 1.2e-28 132.9 97 59.8
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.7e-28 131.7 94 62.8
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.1e-21 109.8 106 52.8
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.4e-16 92.8 130 42.3
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 6.8e-16 90.5 42 90.5
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 4.4e-15 87.8 91 48.4
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 1.8e-08 65.9 44 68.2
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.9e-06 58.5 28 89.3
SEGI_02402 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.9e-06 58.5 75 40.0
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 8.3e-06 57.0 73 42.5


User provided reference genes

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