Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C010584.2 Cucumis melo HOM05D005037 ORTHO05D006274 3.1e-204 714.9 360 100.0
CsaV3_6G035600 Cucumis sativus L. HOM05D005037 ORTHO05D006274 3.3e-198 694.9 360 96.7
ClCG08G002740 Citrullus lanatus HOM05D005037 ORTHO05D006274 9.9e-195 683.3 360 93.9
Sed0001170 Sechium edule HOM05D005037 ORTHO05D006274 9.0e-188 660.2 360 91.7
Hund17388 Selenicereus undatus HOM05D005037 ORTHO05D006274 1.5e-142 510.0 362 71.3
Actinidia16585 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.6e-142 509.2 361 71.7
TAR381G0890 Trochodendron aralioides HOM05D005037 ORTHO05D006274 4.4e-142 508.4 363 71.1
MD05G1011400 Malus domestica HOM05D005037 ORTHO05D006274 1.8e-140 503.1 380 68.2
Sc02g0004500 Simmondsia chinensis HOM05D005037 ORTHO05D006274 4.1e-140 501.9 362 71.0
CiPaw.16G018700 Carya illinoinensis HOM05D005037 ORTHO05D006274 2.6e-139 499.2 363 71.1
Haze_17689 Corylus avellana HOM05D005037 ORTHO05D006274 2.6e-139 499.2 364 72.3
PGR142G4097 Punica granatum HOM05D005037 ORTHO05D006274 5.0e-138 495.0 364 69.0
Peaxi162Scf00066g01930 Petunia axillaris HOM05D005037 ORTHO05D006274 6.5e-138 494.6 377 68.2
Ciclev10001639m.g Citrus clementina HOM05D005037 ORTHO05D006274 8.5e-138 494.2 364 69.8
CANSAT54G1160 Cannabis sativa HOM05D005037 ORTHO05D006274 1.5e-137 493.4 363 66.9
Nn5g28553 Nelumbo nucifera HOM05D005037 ORTHO05D006274 4.2e-137 491.9 362 70.2
arahy.Tifrunner.gnm1.ann1.RY8QGI Arachis hypogaea HOM05D005037 ORTHO05D006274 9.4e-137 490.7 364 67.6
Duzib041G0013 Durio zibethinus HOM05D005037 ORTHO05D006274 9.4e-137 490.7 369 67.5
Nitab4.5_0000174g0240 Nicotiana tabacum HOM05D005037 ORTHO05D006274 9.4e-137 490.7 377 67.9
arahy.Tifrunner.gnm1.ann1.E7XDIB Arachis hypogaea HOM05D005037 ORTHO05D006274 2.1e-136 489.6 365 67.4
Cc10_g13130 Coffea canephora HOM05D005037 ORTHO05D006274 2.7e-136 489.2 361 68.1
RcHm_v2.0_Chr6g0277561 Rosa chinensis HOM05D005037 ORTHO05D006274 2.7e-136 489.2 370 69.5
QL09p029039 Quercus lobata HOM05D005037 ORTHO05D006274 3.6e-136 488.8 362 69.6
PGSC0003DMG400024852 Solanum tuberosum HOM05D005037 ORTHO05D006274 3.6e-136 488.8 377 66.8
Gohir.D02G074100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 4.7e-136 488.4 371 68.2
Potri.002G073200 Populus trichocarpa HOM05D005037 ORTHO05D006274 4.7e-136 488.4 362 69.9
Manes.02G173400 Manihot esculenta HOM05D005037 ORTHO05D006274 1.0e-135 487.3 362 69.1
Thecc.08G141200 Theobroma cacao HOM05D005037 ORTHO05D006274 1.4e-135 486.9 370 67.8
arahy.Tifrunner.gnm1.ann1.HCD3KF Arachis hypogaea HOM05D005037 ORTHO05D006274 1.8e-135 486.5 365 67.1
MSTRG.1382 Avicennia marina HOM05D005037 ORTHO05D006274 1.8e-135 486.5 362 68.5
Gohir.A02G068100 Gossypium hirsutum HOM05D005037 ORTHO05D006274 2.3e-135 486.1 370 67.6
Prupe.8G016400 Prunus persica HOM05D005037 ORTHO05D006274 5.2e-135 485.0 380 66.1
Atru.chr13.1666 Acer truncatum HOM05D005037 ORTHO05D006274 1.1e-134 483.8 363 68.6
Gorai.005G083500 Gossypium raimondii HOM05D005037 ORTHO05D006274 1.5e-134 483.4 372 68.0
Nitab4.5_0002972g0050 Nicotiana tabacum HOM05D005037 ORTHO05D006274 1.5e-134 483.4 377 67.6
vmacro08710 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.0e-134 483.0 360 68.6
TWI32G0322 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 4.4e-134 481.9 363 68.9
Eucgr.G02653 Eucalyptus grandis HOM05D005037 ORTHO05D006274 9.7e-134 480.7 362 68.0
Lalb_Chr21g0311851 Lupinus albus HOM05D005037 ORTHO05D006274 9.7e-134 480.7 367 68.4
SalBow7G3864 Salvia bowleyana HOM05D005037 ORTHO05D006274 9.7e-134 480.7 365 66.6
Duzib116G0940 Durio zibethinus HOM05D005037 ORTHO05D006274 1.3e-133 480.3 370 67.0
Lalb_Chr02g0149921 Lupinus albus HOM05D005037 ORTHO05D006274 1.7e-133 479.9 366 67.5
EL10Ac4g08872 Beta vulgaris HOM05D005037 ORTHO05D006274 3.7e-133 478.8 366 66.4
GSVIVG01010010001 Vitis vinifera HOM05D005037 ORTHO05D006274 6.3e-133 478.0 363 69.4
EL10Ac1g01450 Beta vulgaris HOM05D005037 ORTHO05D006274 1.1e-132 477.2 366 66.1
Oeu002392.1 Olea europaea HOM05D005037 ORTHO05D006274 1.8e-132 476.5 362 67.4
VMungo0540G1405 Vigna mungo HOM05D005037 ORTHO05D006274 3.1e-132 475.7 366 66.7
BolC5t32377H Brassica oleracea HOM05D005037 ORTHO05D006274 4.1e-132 475.3 368 66.3
Rhsim03G0093500 Rhododendron simsii HOM05D005037 ORTHO05D006274 4.1e-132 475.3 360 68.3
CAN.G657.3 Capsicum annuum HOM05D005037 ORTHO05D006274 7.0e-132 474.6 369 67.5
FAN24G2486 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.0e-132 474.6 385 66.2
Potri.005G186700 Populus trichocarpa HOM05D005037 ORTHO05D006274 7.0e-132 474.6 363 69.1
Ah.10g032080 Amaranthus hybridus HOM05D005037 ORTHO05D006274 9.1e-132 474.2 362 66.3
FvH4_2g15010 Fragaria vesca HOM05D005037 ORTHO05D006274 9.1e-132 474.2 383 66.3
Cpa.g.sc13.102 Carica papaya HOM05D005037 ORTHO05D006274 1.6e-131 473.4 378 65.6
TWI60G0144 Tripterygium wilfordii HOM05D005037 ORTHO05D006274 2.0e-131 473.0 366 66.7
Phvul.006G102500 Phaseolus vulgaris HOM05D005037 ORTHO05D006274 2.6e-131 472.6 364 67.0
Sabra05G0142600 Salix brachista HOM05D005037 ORTHO05D006274 3.5e-131 472.2 363 67.5
BcaC05g27657 Brassica carinata HOM05D005037 ORTHO05D006274 4.5e-131 471.9 370 65.4
Sopen04g026520 Solanum pennellii HOM05D005037 ORTHO05D006274 4.5e-131 471.9 377 65.0
Aqoxy6G00356 Aquilegia oxysepala HOM05D005037 ORTHO05D006274 7.7e-131 471.1 362 64.9
AUR62027497 Chenopodium quinoa HOM05D005037 ORTHO05D006274 7.7e-131 471.1 363 66.7
DCAR_015244 Daucus carota HOM05D005037 ORTHO05D006274 7.7e-131 471.1 371 66.0
Solyc04g064570.3 Solanum lycopersicum HOM05D005037 ORTHO05D006274 7.7e-131 471.1 377 64.7
A05p21790 Brassica napus HOM05D005037 ORTHO05D006274 1.3e-130 470.3 370 65.4
BraA05t21100Z Brassica rapa HOM05D005037 ORTHO05D006274 1.3e-130 470.3 370 65.4
C05p36450 Brassica napus HOM05D005037 ORTHO05D006274 2.2e-130 469.5 370 65.1
Migut.C01102 Erythranthe guttata HOM05D005037 ORTHO05D006274 2.9e-130 469.2 366 65.6
Lj1g0018953 Lotus japonicus HOM05D005037 ORTHO05D006274 3.8e-130 468.8 366 66.7
Aa31LG6G9500 Aethionema arabicum HOM05D005037 ORTHO05D006274 6.5e-130 468.0 382 63.9
Ca_30116_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 6.5e-130 468.0 365 65.8
DCAR_019815 Daucus carota HOM05D005037 ORTHO05D006274 8.5e-130 467.6 371 65.0
A10p07730 Brassica napus HOM05D005037 ORTHO05D006274 1.1e-129 467.2 366 65.6
BraSC36t46032Z Brassica rapa HOM05D005037 ORTHO05D006274 1.1e-129 467.2 366 65.6
ATR1136G011 Amborella trichopoda HOM05D005037 ORTHO05D006274 1.9e-129 466.5 365 64.9
Carub.0001s3480 Capsella rubella HOM05D005037 ORTHO05D006274 2.5e-129 466.1 374 63.4
Sp1g33080 Schrenkiella parvula HOM05D005037 ORTHO05D006274 2.5e-129 466.1 369 65.0
AL1G51980 Arabidopsis lyrata HOM05D005037 ORTHO05D006274 3.2e-129 465.7 372 63.7
AUR62033983 Chenopodium quinoa HOM05D005037 ORTHO05D006274 5.5e-129 464.9 363 66.1
CARHR035400 Cardamine hirsuta HOM05D005037 ORTHO05D006274 7.2e-129 464.5 374 62.8
CDE02G2089 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 9.4e-129 464.2 366 64.5
Lj4g0018852 Lotus japonicus HOM05D005037 ORTHO05D006274 9.4e-129 464.2 366 65.8
TPR.G31447 Trifolium pratense HOM05D005037 ORTHO05D006274 9.4e-129 464.2 367 64.9
Medtr6g085170 Medicago truncatula HOM05D005037 ORTHO05D006274 1.2e-128 463.8 365 65.2
FAN27G1276 Fragaria x ananassa HOM05D005037 ORTHO05D006274 2.1e-128 463.0 382 66.0
BcaB02g11416 Brassica carinata HOM05D005037 ORTHO05D006274 2.7e-128 462.6 370 65.4
Thhalv10011594m.g Eutrema salsugineum HOM05D005037 ORTHO05D006274 4.7e-128 461.8 370 64.3
THA.LOC104798858 Tarenaya hassleriana HOM05D005037 ORTHO05D006274 4.7e-128 461.8 378 65.3
Psat1g039480 Pisum sativum HOM05D005037 ORTHO05D006274 8.0e-128 461.1 365 63.8
AT1G43860 Arabidopsis thaliana HOM05D005037 ORTHO05D006274 1.0e-127 460.7 372 62.6
HanXRQChr04g0109491 Helianthus annuus HOM05D005037 ORTHO05D006274 1.4e-127 460.3 360 64.7
PSO675G6067 Papaver somniferum HOM05D005037 ORTHO05D006274 1.4e-127 460.3 383 62.7
PSO541G3185 Papaver somniferum HOM05D005037 ORTHO05D006274 3.0e-127 459.1 383 61.9
Glyma.14G119400 Glycine max HOM05D005037 ORTHO05D006274 4.0e-127 458.8 364 65.7
Lsat_1_v5_gn_1_9740 Lactuca sativa HOM05D005037 ORTHO05D006274 1.2e-126 457.2 370 64.3
PSO421G0325 Papaver somniferum HOM05D005037 ORTHO05D006274 2.6e-126 456.1 368 62.0
ECA233G3664 Erigeron canadensis HOM05D005037 ORTHO05D006274 3.4e-126 455.7 351 66.7
BcaB07g33972 Brassica carinata HOM05D005037 ORTHO05D006274 4.4e-126 455.3 365 63.3
PSO673G0007 Papaver somniferum HOM05D005037 ORTHO05D006274 1.3e-125 453.8 368 62.2
Glyma.11G142700 Glycine max HOM05D005037 ORTHO05D006274 2.4e-124 449.5 364 64.3
HPP92_020501 Vanilla planifolia HOM05D005037 ORTHO05D006274 5.9e-123 444.9 362 63.3
CDE08G0468 Ceratophyllum demersum HOM05D005037 ORTHO05D006274 3.8e-122 442.2 356 62.1
SGA_v2.0_scaffold25G11149 Striga asiatica HOM05D005037 ORTHO05D006274 3.8e-122 442.2 395 60.0
Lj4A690T47 Lonicera japonica HOM05D005037 ORTHO05D006274 1.2e-115 420.6 310 70.3
ECA234G0804 Erigeron canadensis HOM05D005037 ORTHO05D006274 2.3e-114 416.4 358 60.6
Os08g0107500 Oryza sativa ssp. japonica HOM05D005037 ORTHO05D006274 2.3e-114 416.4 364 58.0
Zm00001eb260230 Zea mays HOM05D005037 ORTHO05D006274 5.0e-114 415.2 362 58.8
SHI09275 Sapria himalayana HOM05D005037 ORTHO05D006274 2.5e-113 412.9 364 59.6
SEGI_36163 Sequoiadendron giganteum HOM05D005037 ORTHO05D006274 3.6e-112 409.1 379 55.4
CSS0001186 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 1.2e-110 404.1 315 67.0
Pp3c4_180 Physcomitrium patens HOM05D005037 ORTHO05D006274 2.3e-106 389.8 387 52.7
unitig_747.g21501 Utricularia gibba HOM05D005037 ORTHO05D006274 3.9e-106 389.0 308 69.5
PSO673G0037 Papaver somniferum HOM05D005037 ORTHO05D006274 1.1e-105 387.5 345 57.7
SMO348G0060 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 4.0e-103 379.0 361 55.1
Dinv41137 Davidia involucrata HOM05D005037 ORTHO05D006274 1.2e-102 377.5 347 59.9
HPP92_020498 Vanilla planifolia HOM05D005037 ORTHO05D006274 1.2e-102 377.5 316 63.3
Oeu001556.2 Olea europaea HOM05D005037 ORTHO05D006274 5.0e-98 362.1 354 55.1
AagrBONN_evm.TU.Sc2ySwM_117.3544 Anthoceros agrestis HOM05D005037 ORTHO05D006274 5.6e-97 358.6 358 52.0
CSS0023189 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.3e-95 353.2 315 60.3
Ca_25512_v3 Cicer arietinum L. HOM05D005037 ORTHO05D006274 3.1e-95 352.8 307 59.6
Cfa018383 Carpinus fangiana HOM05D005037 ORTHO05D006274 4.9e-93 345.5 364 55.5
COL.COLO4_33811 Corchorus olitorius HOM05D005037 ORTHO05D006274 1.4e-92 344.0 369 52.3
vmacro21120 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 2.3e-87 326.6 271 62.0
FAN20G2613 Fragaria x ananassa HOM05D005037 ORTHO05D006274 3.3e-81 306.2 196 82.1
FAN15G0656 Fragaria x ananassa HOM05D005037 ORTHO05D006274 7.9e-67 258.5 155 85.2
PRCOL_00006527 Prasinoderma coloniale HOM05D005037 ORTHO05D006274 1.0e-66 258.1 368 40.5
PSO729G0215 Papaver somniferum HOM05D005037 ORTHO05D006274 3.9e-66 256.1 259 54.1
Cre01.g017500 Chlamydomonas reinhardtii HOM05D005037 ORTHO05D006274 5.1e-66 255.8 251 51.4
SMO272G0010 Selaginella moellendorffii HOM05D005037 ORTHO05D006274 1.6e-64 250.8 161 77.6
PSO017G3306 Papaver somniferum HOM05D005037 ORTHO05D006274 2.5e-57 226.9 330 43.6
CBR_g48721 Chara braunii HOM05D005037 ORTHO05D006274 1.2e-51 208.0 327 36.4
MD05G1011500 Malus domestica HOM05D005037 ORTHO05D006274 3.5e-51 206.5 219 50.2
MCO07G375 Micromonas commoda HOM05D005037 ORTHO05D006274 7.9e-51 205.3 181 55.8
CSS0016864 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 2.1e-48 197.2 160 66.9
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 8.4e-45 185.3 163 62.6
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 7.9e-43 178.7 163 61.3
Mapoly0003s0227 Marchantia polymorpha HOM05D005037 ORTHO05D006274 1.8e-34 151.0 229 37.1
C06p00420 Brassica napus HOM05D005037 ORTHO05D006274 6.9e-31 139.0 133 59.4
vmacro21119 Vaccinium macrocarpon HOM05D005037 ORTHO05D006274 9.1e-31 138.7 121 62.0
Aa31LG6G9600 Aethionema arabicum HOM05D005037 ORTHO05D006274 1.5e-30 137.9 156 43.6
C06p00390 Brassica napus HOM05D005037 ORTHO05D006274 1.5e-30 137.9 133 58.6
RcHm_v2.0_Chr2g0145391 Rosa chinensis HOM05D005037 ORTHO05D006274 2.2e-29 134.0 81 82.7
Actinidia15171 Actinidia chinensis HOM05D005037 ORTHO05D006274 2.2e-24 117.5 84 71.4
Actinidia15170 Actinidia chinensis HOM05D005037 ORTHO05D006274 3.2e-20 103.6 102 49.0
BraA06t27783Z Brassica rapa HOM05D005037 ORTHO05D013118 1.4e-18 98.2 112 45.5
CSS0019617 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.8e-16 89.7 51 80.4
CSS0038364 Camellia sinensis var. sinensis HOM05D010284 ORTHO05D010737 4.8e-16 89.7 51 80.4
PSO729G0072 Papaver somniferum HOM05D005037 ORTHO05D006274 1.6e-14 84.7 177 33.9
BraA01t00001Z Brassica rapa HOM05D005037 ORTHO05D013118 2.5e-12 77.4 90 45.6


User provided reference genes

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