Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C001093.2 Cucumis melo HOM05D000216 ORTHO05D000634 9.8e-58 226.5 107 100.0
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.3e-57 226.1 107 99.1
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.3e-57 226.1 107 99.1
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 3.5e-55 218.0 107 94.4
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 7.8e-55 216.9 107 94.4
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 2.3e-54 215.3 107 93.5
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 3.0e-54 214.9 107 94.4
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 3.0e-54 214.9 107 94.4
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.9e-54 214.5 107 92.5
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 5.0e-54 214.2 107 91.6
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 1.5e-53 212.6 107 92.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 1.9e-53 212.2 107 92.5
Hma1.2p1_0094F.1_g047104 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.9e-53 212.2 107 92.5
GSVIVG01019173001 Vitis vinifera HOM05D000216 ORTHO05D000634 2.5e-53 211.8 107 91.6
GSVIVG01017094001 Vitis vinifera HOM05D000216 ORTHO05D000634 7.3e-53 210.3 107 90.7
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 9.5e-53 209.9 107 89.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 9.5e-53 209.9 107 89.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 9.5e-53 209.9 106 92.5
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.2e-52 209.5 106 91.5
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.6e-52 209.1 107 89.7
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 1.6e-52 209.1 107 92.5
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 2.8e-52 208.4 104 93.3
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 2.8e-52 208.4 104 93.3
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 2.8e-52 208.4 104 93.3
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.8e-52 208.4 107 90.7
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 4.7e-52 207.6 107 89.7
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.7e-52 207.6 107 90.7
PGSC0003DMG400020296 Solanum tuberosum HOM05D000216 ORTHO05D000634 4.7e-52 207.6 107 90.7
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 6.2e-52 207.2 107 90.7
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 1.4e-51 206.1 107 88.8
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
BolSC44t60847H Brassica oleracea HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
BraSC140t45588Z Brassica rapa HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 1.4e-51 206.1 107 89.7
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28153 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28617 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-51 204.9 107 87.9
Lalb_Chr09g0335371 Lupinus albus HOM05D000216 ORTHO05D000634 5.2e-51 204.1 107 88.8
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 6.8e-51 203.8 107 88.8
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 6.8e-51 203.8 107 88.8
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 8.9e-51 203.4 107 87.9
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 2.0e-50 202.2 107 86.9
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.0e-50 202.2 107 86.9
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.0e-50 202.2 107 86.9
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 2.0e-50 202.2 107 89.7
arahy.Tifrunner.gnm1.ann1.KRC0HM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.6e-50 201.8 106 88.7
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.6e-50 201.8 107 87.9
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 2.6e-50 201.8 107 87.9
Psat4g147920 Pisum sativum HOM05D000216 ORTHO05D000634 3.4e-50 201.4 107 88.8
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 5.8e-50 200.7 107 86.0
Lsat_1_v5_gn_9_5941 Lactuca sativa HOM05D000216 ORTHO05D000634 7.5e-50 200.3 107 86.0
ClCG01G011260 Citrullus lanatus HOM05D000216 ORTHO05D000634 9.9e-50 199.9 107 87.9
SGA_v2.0_scaffold119G32687 Striga asiatica HOM05D000216 ORTHO05D000634 9.9e-50 199.9 107 86.0
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.3e-49 199.5 107 86.0
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.3e-49 199.5 107 86.0
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 8.3e-49 196.8 107 86.0
Eucgr.J01352 Eucalyptus grandis HOM05D000216 ORTHO05D000634 3.2e-48 194.9 107 84.1
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 3.2e-48 194.9 110 83.6
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 7.1e-48 193.7 110 83.6
CAN.G844.3 Capsicum annuum HOM05D000216 ORTHO05D000634 9.2e-48 193.4 107 86.0
AUR62024082 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.2e-47 193.0 105 85.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.6e-47 192.6 107 87.9
CAN.G939.14 Capsicum annuum HOM05D000216 ORTHO05D000634 1.2e-44 183.0 90 92.2
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-43 179.5 96 85.4
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.0e-42 175.6 90 90.0
Lj2P1224T100 Lonicera japonica HOM05D000216 ORTHO05D000634 4.4e-42 174.5 86 91.9
Lj2P1227T99 Lonicera japonica HOM05D000216 ORTHO05D000634 4.4e-42 174.5 86 91.9
Lalb_Chr22g0361661 Lupinus albus HOM05D000216 ORTHO05D000634 4.9e-41 171.0 85 91.8
CAN.G1738.9 Capsicum annuum HOM05D000216 ORTHO05D000634 2.4e-40 168.7 90 86.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 5.4e-40 167.5 107 78.5
MELO3C027929.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.1e-39 165.6 78 98.7
Psat5g134600 Pisum sativum HOM05D000216 ORTHO05D000634 2.1e-39 165.6 85 91.8
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.7e-38 162.5 86 86.0
Hund25861 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.3e-37 157.9 86 83.7
Lalb_Chr06g0173021 Lupinus albus HOM05D000216 ORTHO05D000634 7.3e-37 157.1 88 81.8
HanXRQChr07g0188331 Helianthus annuus HOM05D000216 ORTHO05D000634 8.1e-36 153.7 79 87.3
Sc10g0006900 Simmondsia chinensis HOM05D000216 ORTHO05D000634 1.4e-35 152.9 90 75.6
HanXRQChr00c0988g0578121 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-35 152.5 88 79.5
Nitab4.5_0002868g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.9e-35 150.6 107 70.1
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 6.4e-33 144.1 75 89.3
Hund12597 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.4e-32 142.9 108 62.0
SEGI_37297 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.2e-31 139.8 95 68.4
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 2.3e-30 135.6 96 64.6
Gorai.001G101300 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.7e-30 133.7 69 85.5
BolC5t28870H Brassica oleracea HOM05D000216 ORTHO05D000634 3.3e-29 131.7 108 67.6
Oeu062867.1 Olea europaea HOM05D000216 ORTHO05D000634 1.8e-27 125.9 73 76.7
TPR.G17548 Trifolium pratense HOM05D000216 ORTHO05D000634 1.2e-23 113.2 55 94.5
Gohir.A09G019050 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.7e-23 112.1 81 65.4
Nitab4.5_0000172g0280 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.9e-23 110.5 78 66.7
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 5.6e-21 104.4 48 97.9
Oeu045561.1 Olea europaea HOM05D000216 ORTHO05D000634 9.6e-21 103.6 56 82.1
arahy.Tifrunner.gnm1.ann1.ZJYB0J Arachis hypogaea HOM05D000216 ORTHO05D000473 1.6e-20 102.8 48 95.8
Solyc03g095380.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-19 100.1 80 63.8
HanXRQChr14g0436631 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-19 99.8 48 93.8
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-19 98.6 54 81.5
ATR0624G050 Amborella trichopoda HOM05D000216 ORTHO05D000634 9.0e-19 97.1 61 72.1
arahy.Tifrunner.gnm1.ann1.09TZAG Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-18 96.7 48 89.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.3e-17 93.2 48 87.5
COL.COLO4_00652 Corchorus olitorius HOM05D000216 ORTHO05D000634 4.2e-16 88.2 54 70.4
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.1e-16 87.4 106 50.9
Solyc01g017510.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.1e-16 87.4 75 60.0
Oeu050097.1 Olea europaea HOM05D000216 ORTHO05D000634 1.8e-14 82.8 48 79.2
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 3.9e-14 81.6 43 86.0
Migut.L00290 Erythranthe guttata HOM05D000216 ORTHO05D000634 6.7e-14 80.9 46 80.4
Aa31csc39G120 Aethionema arabicum HOM05D000216 ORTHO05D000634 1.5e-13 79.7 37 91.9
Lalb_Chr13g0292881 Lupinus albus HOM05D000216 ORTHO05D000634 1.5e-13 79.7 52 73.1
arahy.Tifrunner.gnm1.ann1.4QEF9J Arachis hypogaea HOM05D000216 ORTHO05D000634 2.5e-13 79.0 97 47.4
Ah.10g028700 Amaranthus hybridus HOM05D029963 ORTHO05D026499 3.3e-13 78.6 38 94.7
Gohir.D13G143950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.7e-12 75.1 38 92.1
Lsat_1_v5_gn_7_70621 Lactuca sativa HOM05D000216 ORTHO05D000634 6.2e-12 74.3 46 69.6
Sopen08g009650 Solanum pennellii HOM05D000216 ORTHO05D000634 6.2e-12 74.3 49 73.5
Potri.019G028101 Populus trichocarpa HOM05D000216 ORTHO05D000634 3.1e-11 72.0 38 89.5
HanXRQChr03g0073121 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-10 68.6 33 97.0
Solyc12g036010.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.3e-09 66.6 37 83.8
CAN.G43.2 Capsicum annuum HOM05D000216 ORTHO05D000634 1.7e-09 66.2 40 75.0
FAN27G0873 Fragaria x ananassa HOM05D000743 ORTHO05D000580 3.8e-09 65.1 31 96.8
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.9e-09 64.7 107 40.2
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.9e-09 64.7 107 40.2
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.9e-09 64.7 107 40.2
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 4.9e-09 64.7 107 40.2
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 4.2e-08 61.6 34 85.3
Migut.D01415 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.6e-07 59.7 28 100.0
Nn256s45908 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-06 55.5 30 86.7
Nn2g14713 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-06 55.5 30 86.7
Nn2g14716 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-06 55.5 30 86.7
Nn2g14718 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-06 55.5 30 86.7
Cc00_g14860 Coffea canephora HOM05D000228 ORTHO05D001545 6.7e-06 54.3 51 52.9
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 6.7e-06 54.3 50 50.0
arahy.Tifrunner.gnm1.ann1.7382T8 Arachis hypogaea HOM05D000216 ORTHO05D000634 8.7e-06 53.9 29 86.2


User provided reference genes

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