Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 8.4e-37 156.4 72 100.0
MELO3C000611.2 Cucumis melo HOM05D005384 ORTHO05D006477 8.4e-37 156.4 72 100.0
CsaV3_5G020310 Cucumis sativus L. HOM05D005384 ORTHO05D006477 2.4e-36 154.8 72 98.6
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.3e-34 148.3 72 94.4
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 7.6e-30 133.3 73 84.9
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 1.3e-29 132.5 73 82.2
Atru.chr1.2109 Acer truncatum HOM05D005384 ORTHO05D006477 4.9e-29 130.6 73 83.6
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 8.4e-29 129.8 73 82.2
CiPaw.03G076200 Carya illinoinensis HOM05D005384 ORTHO05D006477 1.1e-28 129.4 73 80.8
Dinv05843 Davidia involucrata HOM05D005384 ORTHO05D006477 1.9e-28 128.6 73 79.5
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 7.1e-28 126.7 73 78.1
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 9.3e-28 126.3 75 80.0
Duzib133G1182 Durio zibethinus HOM05D005384 ORTHO05D006477 1.2e-27 125.9 73 78.1
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 1.2e-27 125.9 74 79.7
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 1.6e-27 125.6 73 78.1
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 3.5e-27 124.4 74 79.7
Gohir.D12G051100 Gossypium hirsutum HOM05D005384 ORTHO05D006477 3.5e-27 124.4 73 76.7
Gorai.008G054400 Gossypium raimondii HOM05D005384 ORTHO05D006477 3.5e-27 124.4 73 76.7
Gohir.A12G052600 Gossypium hirsutum HOM05D005384 ORTHO05D006477 4.6e-27 124.0 73 76.7
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 1.3e-26 122.5 74 77.0
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 1.3e-26 122.5 74 79.7
Thecc.04G058100 Theobroma cacao HOM05D005384 ORTHO05D006477 1.3e-26 122.5 73 78.1
COL.COLO4_24446 Corchorus olitorius HOM05D005384 ORTHO05D006477 1.8e-26 122.1 73 76.7
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 1.8e-26 122.1 72 77.8
Gohir.D08G048500 Gossypium hirsutum HOM05D005384 ORTHO05D006477 2.3e-26 121.7 73 76.7
Gorai.004G048000 Gossypium raimondii HOM05D005384 ORTHO05D006477 2.3e-26 121.7 73 76.7
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 2.3e-26 121.7 73 79.5
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 3.0e-26 121.3 72 80.6
Cpa.g.sc765.1 Carica papaya HOM05D005384 ORTHO05D006477 3.9e-26 120.9 73 76.7
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 6.7e-26 120.2 73 75.3
Sopen08g025890 Solanum pennellii HOM05D005384 ORTHO05D006477 6.7e-26 120.2 73 75.3
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 8.7e-26 119.8 72 73.6
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.9e-25 118.6 73 76.7
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.9e-25 118.6 73 76.7
CSS0046614 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 1.9e-25 118.6 74 74.3
Oeu054547.2 Olea europaea HOM05D005384 ORTHO05D006477 1.9e-25 118.6 72 69.4
Peaxi162Scf00084g00818 Petunia axillaris HOM05D005384 ORTHO05D006477 1.9e-25 118.6 73 74.0
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 2.5e-25 118.2 73 75.3
FvH4_7g04410 Fragaria vesca HOM05D005384 ORTHO05D006477 3.3e-25 117.9 73 75.3
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.3e-25 117.9 73 75.3
FAN03G3298 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.3e-25 117.9 73 75.3
RcHm_v2.0_Chr1g0329501 Rosa chinensis HOM05D005384 ORTHO05D006477 3.3e-25 117.9 73 75.3
TAR629G1600 Trochodendron aralioides HOM05D005384 ORTHO05D006477 5.7e-25 117.1 74 74.3
Eucgr.J01644 Eucalyptus grandis HOM05D005384 ORTHO05D006477 1.3e-24 115.9 73 74.0
Lj3C397G6 Lonicera japonica HOM05D005384 ORTHO05D006477 1.6e-24 115.5 74 75.7
Sabra17G0113100 Salix brachista HOM05D005384 ORTHO05D006477 2.1e-24 115.2 72 77.8
Sabra17G0115200 Salix brachista HOM05D005384 ORTHO05D006477 2.1e-24 115.2 72 77.8
FAN10G2966 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.8e-24 114.8 73 74.0
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 3.7e-24 114.4 72 75.0
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 4.8e-24 114.0 73 69.9
Oeu024119.2 Olea europaea HOM05D005384 ORTHO05D006477 4.8e-24 114.0 73 68.5
TAR636G3654 Trochodendron aralioides HOM05D005384 ORTHO05D006477 4.8e-24 114.0 74 74.3
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 6.2e-24 113.6 72 72.2
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 6.2e-24 113.6 72 72.2
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 8.2e-24 113.2 73 71.2
Migut.E00282 Erythranthe guttata HOM05D005384 ORTHO05D006477 8.2e-24 113.2 73 71.2
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 8.2e-24 113.2 72 72.2
Gohir.A08G038300 Gossypium hirsutum HOM05D005384 ORTHO05D006477 8.2e-24 113.2 73 72.6
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 1.1e-23 112.8 72 70.8
Glyma.16G102300 Glycine max HOM05D005384 ORTHO05D006477 1.4e-23 112.5 72 72.2
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.8e-23 112.1 74 73.0
Sabra17G0116500 Salix brachista HOM05D005384 ORTHO05D006477 1.8e-23 112.1 72 76.4
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 2.4e-23 111.7 73 74.0
VMungo0251G2756 Vigna mungo HOM05D005384 ORTHO05D006477 2.4e-23 111.7 72 69.4
TPR.G28960 Trifolium pratense HOM05D005384 ORTHO05D006477 3.1e-23 111.3 72 70.8
AUR62027521 Chenopodium quinoa HOM05D005384 ORTHO05D006477 4.0e-23 110.9 72 69.4
AUR62030216 Chenopodium quinoa HOM05D005384 ORTHO05D006477 4.0e-23 110.9 72 69.4
Aqoxy3G02532 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 6.9e-23 110.2 73 71.2
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 6.9e-23 110.2 72 69.4
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 6.9e-23 110.2 73 72.6
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 9.0e-23 109.8 74 71.6
MD02G1270000 Malus domestica HOM05D005384 ORTHO05D006477 9.0e-23 109.8 76 69.7
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 1.2e-22 109.4 72 68.1
MD00G1152000 Malus domestica HOM05D005384 ORTHO05D006477 1.2e-22 109.4 73 74.0
Psat4g111160 Pisum sativum HOM05D005384 ORTHO05D006477 1.5e-22 109.0 72 69.4
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 3.4e-22 107.8 72 68.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 3.4e-22 107.8 74 68.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 5.8e-22 107.1 72 68.1
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 5.8e-22 107.1 72 68.1
CANSAT25G0269 Cannabis sativa HOM05D005384 ORTHO05D006477 7.6e-22 106.7 72 69.4
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 1.0e-21 106.3 72 68.1
Ah.14g086470 Amaranthus hybridus HOM05D005384 ORTHO05D006477 6.5e-21 103.6 73 68.5
HPP92_022596 Vanilla planifolia HOM05D005384 ORTHO05D006477 6.5e-21 103.6 73 64.4
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 8.4e-21 103.2 73 69.9
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 1.1e-20 102.8 73 69.9
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.1e-20 102.8 73 67.1
CDE06G0914 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 1.9e-20 102.1 73 61.6
CDE12G0199 Ceratophyllum demersum HOM05D005384 ORTHO05D006477 1.9e-20 102.1 73 61.6
Aqoxy2G03702_Aqoxy2G03703 Aquilegia oxysepala HOM05D005384 ORTHO05D006477 5.5e-20 100.5 73 68.5
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 7.1e-20 100.1 75 64.0
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 1.2e-19 99.4 73 65.8
EL10Ac8g19736 Beta vulgaris HOM05D005384 ORTHO05D006477 1.6e-19 99.0 73 67.1
Os02g0167500 Oryza sativa ssp. japonica HOM05D005384 ORTHO05D006477 1.6e-19 99.0 73 60.3
Zm00001eb306360 Zea mays HOM05D005384 ORTHO05D006477 3.5e-19 97.8 73 60.3
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.1e-19 97.1 77 61.0
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 7.9e-19 96.7 73 60.3
Aa31LG10G6030 Aethionema arabicum HOM05D005384 ORTHO05D006477 3.0e-18 94.7 73 63.0
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 5.1e-18 94.0 73 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1178 Anthoceros agrestis HOM05D005384 ORTHO05D006477 3.3e-17 91.3 73 63.0
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 5.7e-17 90.5 73 58.9
Lj2A247G82 Lonicera japonica HOM05D005384 ORTHO05D006477 5.7e-17 90.5 109 48.6
Mapoly0005s0121 Marchantia polymorpha HOM05D005384 ORTHO05D006477 9.7e-17 89.7 72 61.1
Sc22g0001400 Simmondsia chinensis HOM05D005384 ORTHO05D006477 2.2e-16 88.6 74 59.5
Aa31LG10G8980 Aethionema arabicum HOM05D005384 ORTHO05D006477 3.7e-16 87.8 73 58.9
Zm00001eb361710 Zea mays HOM05D005384 ORTHO05D006477 3.7e-16 87.8 73 56.2
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 1.1e-15 86.3 73 57.5
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 1.4e-15 85.9 73 60.3
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 2.4e-15 85.1 72 55.6
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 5.3e-15 84.0 72 58.3
Actinidia10880 Actinidia chinensis HOM05D005384 ORTHO05D006477 2.0e-14 82.0 72 55.6
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 2.0e-14 82.0 72 56.9
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 4.5e-14 80.9 72 55.6
Pp3c10_21700 Physcomitrium patens HOM05D005384 ORTHO05D006477 5.9e-14 80.5 72 52.8
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 1.0e-13 79.7 72 55.6
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 1.0e-13 79.7 72 55.6
Pp3c20_21810 Physcomitrium patens HOM05D005384 ORTHO05D006477 1.4e-12 75.9 72 47.2
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 2.5e-12 75.1 43 79.1
SMO351G0487 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 6.1e-11 70.5 80 47.5
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 9.1e-07 56.6 73 41.1


User provided reference genes

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