Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1315300 Malus domestica HOM05D001061 ORTHO05D006808 4.8e-82 307.8 152 100.0
MD03G1296000 Malus domestica HOM05D001061 ORTHO05D006808 2.2e-63 245.7 144 85.4
Prupe.8G271300 Prunus persica HOM05D001061 ORTHO05D006808 5.0e-55 218.0 150 73.3
Gohir.D07G132500 Gossypium hirsutum HOM05D001061 ORTHO05D006808 9.4e-54 213.8 150 70.7
Duzib138G0299 Durio zibethinus HOM05D001061 ORTHO05D006808 3.6e-53 211.8 150 70.7
Gorai.001G143900 Gossypium raimondii HOM05D001061 ORTHO05D006808 6.1e-53 211.1 150 70.0
COL.COLO4_23240 Corchorus olitorius HOM05D001061 ORTHO05D006808 7.9e-53 210.7 150 70.7
Gohir.A07G128100 Gossypium hirsutum HOM05D001061 ORTHO05D006808 7.9e-53 210.7 150 70.0
RcHm_v2.0_Chr7g0241701 Rosa chinensis HOM05D001061 ORTHO05D006808 1.5e-51 206.5 151 68.9
Sabra14G0090200 Salix brachista HOM05D001061 ORTHO05D006808 2.6e-51 205.7 150 68.0
Thecc.01G312500 Theobroma cacao HOM05D001061 ORTHO05D006808 3.3e-51 205.3 150 68.7
Potri.014G121701 Populus trichocarpa HOM05D001061 ORTHO05D006808 4.4e-51 204.9 150 68.7
FAN13G0115 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.3e-50 203.4 145 69.7
FvH4_5g39410 Fragaria vesca HOM05D001061 ORTHO05D006808 1.1e-49 200.3 145 69.0
QL12p020098 Quercus lobata HOM05D001061 ORTHO05D006808 3.1e-49 198.7 149 66.4
Manes.01G227200 Manihot esculenta HOM05D001061 ORTHO05D006808 6.9e-49 197.6 150 66.0
PGR044G1584 Punica granatum HOM05D001061 ORTHO05D006808 6.9e-49 197.6 150 65.3
Cfa005809 Carpinus fangiana HOM05D001061 ORTHO05D006808 1.2e-48 196.8 150 66.7
Ciclev10018525m.g Citrus clementina HOM05D001061 ORTHO05D006808 1.2e-48 196.8 150 66.0
FAN08G2155 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.2e-48 196.8 138 71.0
FAN08G2326 Fragaria x ananassa HOM05D001061 ORTHO05D006808 1.2e-48 196.8 138 71.0
GSVIVG01028112001 Vitis vinifera HOM05D001061 ORTHO05D006808 1.2e-48 196.8 150 66.7
Atru.chr5.1014 Acer truncatum HOM05D001061 ORTHO05D006808 2.0e-48 196.1 149 66.4
CiPaw.07G116800 Carya illinoinensis HOM05D001061 ORTHO05D006808 2.0e-48 196.1 150 65.3
ClCG09G005140 Citrullus lanatus HOM05D001061 ORTHO05D006808 2.0e-48 196.1 150 66.0
Haze_05032 Corylus avellana HOM05D001061 ORTHO05D006808 2.6e-48 195.7 150 66.7
Lalb_Chr15g0078211 Lupinus albus HOM05D001061 ORTHO05D006808 2.6e-48 195.7 150 68.0
Lalb_Chr18g0049161 Lupinus albus HOM05D001061 ORTHO05D006808 4.5e-48 194.9 150 64.7
Sed0020923 Sechium edule HOM05D001061 ORTHO05D006808 5.9e-48 194.5 150 66.0
Eucgr.K03542 Eucalyptus grandis HOM05D001061 ORTHO05D006808 7.7e-48 194.1 150 66.0
Actinidia21002 Actinidia chinensis HOM05D001061 ORTHO05D006808 1.7e-47 193.0 150 64.0
CsaV3_7G029930 Cucumis sativus L. HOM05D001061 ORTHO05D006808 1.7e-47 193.0 150 64.7
Ca_09207_v3 Cicer arietinum L. HOM05D001061 ORTHO05D006808 2.9e-47 192.2 150 65.3
Cc01_g21360 Coffea canephora HOM05D001061 ORTHO05D006808 6.5e-47 191.0 150 64.0
CAN.G777.8 Capsicum annuum HOM05D001061 ORTHO05D006808 8.5e-47 190.7 149 63.1
Lj1g0020273 Lotus japonicus HOM05D001061 ORTHO05D006808 1.4e-46 189.9 150 63.3
Sopen01g031290 Solanum pennellii HOM05D001061 ORTHO05D006808 1.4e-46 189.9 149 63.1
Solyc01g079520.3 Solanum lycopersicum HOM05D001061 ORTHO05D006808 1.9e-46 189.5 149 63.1
vmacro15113 Vaccinium macrocarpon HOM05D001061 ORTHO05D006808 1.9e-46 189.5 147 65.3
CANSAT25G3364 Cannabis sativa HOM05D001061 ORTHO05D006808 2.5e-46 189.1 150 65.3
Cpa.g.sc50.141 Carica papaya HOM05D001061 ORTHO05D006808 4.2e-46 188.3 150 63.3
Nitab4.5_0001301g0050 Nicotiana tabacum HOM05D001061 ORTHO05D006808 4.2e-46 188.3 149 63.8
Actinidia25844 Actinidia chinensis HOM05D001061 ORTHO05D006808 5.5e-46 188.0 150 63.3
arahy.Tifrunner.gnm1.ann1.X1CI0G Arachis hypogaea HOM05D001061 ORTHO05D006808 7.2e-46 187.6 150 65.3
MD01G1013000 Malus domestica HOM05D001061 ORTHO05D006808 7.2e-46 187.6 137 70.1
arahy.Tifrunner.gnm1.ann1.LRQA6N Arachis hypogaea HOM05D001061 ORTHO05D006808 9.4e-46 187.2 150 65.3
Nitab4.5_0008811g0030 Nicotiana tabacum HOM05D001061 ORTHO05D006808 9.4e-46 187.2 149 62.4
Nn3g21675 Nelumbo nucifera HOM05D001061 ORTHO05D006808 1.6e-45 186.4 150 61.3
Peaxi162Scf00691g00115 Petunia axillaris HOM05D001061 ORTHO05D006808 1.6e-45 186.4 148 63.5
VMungo1383G2073 Vigna mungo HOM05D001061 ORTHO05D006808 1.6e-45 186.4 152 63.2
TPR.G4121 Trifolium pratense HOM05D001061 ORTHO05D006808 2.1e-45 186.0 150 64.7
CSS0018335 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 2.7e-45 185.7 150 61.3
Phvul.001G212500 Phaseolus vulgaris HOM05D001061 ORTHO05D006808 6.1e-45 184.5 154 63.0
MELO3C015928.2 Cucumis melo HOM05D001061 ORTHO05D006808 7.9e-45 184.1 161 60.2
TAR365G1172 Trochodendron aralioides HOM05D001061 ORTHO05D006808 1.4e-44 183.3 150 63.3
Glyma.19G216000 Glycine max HOM05D001061 ORTHO05D006808 2.3e-44 182.6 151 63.6
Rhsim01G0290300 Rhododendron simsii HOM05D001061 ORTHO05D006808 2.3e-44 182.6 170 57.6
Hund09627 Selenicereus undatus HOM05D001061 ORTHO05D006808 2.3e-44 182.6 156 57.7
Migut.D00086 Erythranthe guttata HOM05D001061 ORTHO05D006808 3.0e-44 182.2 149 61.7
Psat3g020000 Pisum sativum HOM05D001061 ORTHO05D006808 3.9e-44 181.8 139 66.2
Sc17g0000490 Simmondsia chinensis HOM05D001061 ORTHO05D006808 5.2e-44 181.4 149 61.7
Oeu038017.1 Olea europaea HOM05D001061 ORTHO05D006808 2.0e-43 179.5 150 57.3
Medtr7g109470 Medicago truncatula HOM05D001061 ORTHO05D006808 3.3e-43 178.7 150 63.3
CSS0047021 Camellia sinensis var. sinensis HOM05D001061 ORTHO05D006808 7.4e-43 177.6 160 58.1
TWI18G0793 Tripterygium wilfordii HOM05D001061 ORTHO05D006808 1.7e-42 176.4 150 59.3
Dinv33112 Davidia involucrata HOM05D001061 ORTHO05D006808 2.8e-42 175.6 149 61.7
SalBow3G2997 Salvia bowleyana HOM05D001061 ORTHO05D006808 1.4e-41 173.3 150 57.3
Thhalv10028364m.g Eutrema salsugineum HOM05D001061 ORTHO05D006808 1.8e-41 172.9 149 57.7
AT4G02070 Arabidopsis thaliana HOM05D001061 ORTHO05D006808 3.1e-41 172.2 149 58.4
PSO210G6116 Papaver somniferum HOM05D001061 ORTHO05D006808 4.1e-41 171.8 150 59.3
EL10As5g23522 Beta vulgaris HOM05D001061 ORTHO05D006808 5.3e-41 171.4 157 54.1
PSO761G0517 Papaver somniferum HOM05D001061 ORTHO05D006808 5.3e-41 171.4 150 58.7
ECA236G3964 Erigeron canadensis HOM05D001061 ORTHO05D006808 7.0e-41 171.0 150 58.7
CARHR249610 Cardamine hirsuta HOM05D001061 ORTHO05D006808 1.6e-40 169.9 146 57.5
Lsat_1_v5_gn_8_165800 Lactuca sativa HOM05D001061 ORTHO05D006808 1.6e-40 169.9 150 56.7
Ah.11g049290 Amaranthus hybridus HOM05D001061 ORTHO05D006808 2.0e-40 169.5 148 55.4
MSTRG.21683 Avicennia marina HOM05D001061 ORTHO05D006808 2.6e-40 169.1 150 57.3
HanXRQChr15g0464141 Helianthus annuus HOM05D001061 ORTHO05D006808 3.5e-40 168.7 150 58.0
Sp6g01950 Schrenkiella parvula HOM05D001061 ORTHO05D006808 4.5e-40 168.3 149 56.4
BraA03t12306Z Brassica rapa HOM05D001061 ORTHO05D006808 5.9e-40 167.9 149 55.7
THA.LOC104825941 Tarenaya hassleriana HOM05D001061 ORTHO05D006808 7.7e-40 167.5 149 56.4
Aqoxy2G02780 Aquilegia oxysepala HOM05D001061 ORTHO05D006808 1.3e-39 166.8 143 60.8
AL6G51170 Arabidopsis lyrata HOM05D001061 ORTHO05D006808 1.3e-39 166.8 149 56.4
A03p31260 Brassica napus HOM05D001061 ORTHO05D006808 1.3e-39 166.8 149 55.7
Carub.0006s3516 Capsella rubella HOM05D001061 ORTHO05D006808 1.3e-39 166.8 149 56.4
AUR62024662 Chenopodium quinoa HOM05D001061 ORTHO05D006808 1.3e-39 166.8 157 51.6
Lj1A18T22 Lonicera japonica HOM05D001061 ORTHO05D006808 1.3e-39 166.8 151 56.3
AUR62011818 Chenopodium quinoa HOM05D001061 ORTHO05D006808 2.9e-39 165.6 157 51.0
ATR0693G191 Amborella trichopoda HOM05D001061 ORTHO05D006808 3.8e-39 165.2 138 58.0
BcaC01g06778 Brassica carinata HOM05D001061 ORTHO05D006808 5.0e-39 164.9 149 55.0
BolC3t16097H Brassica oleracea HOM05D001061 ORTHO05D006808 5.0e-39 164.9 149 55.0
HPP92_026958 Vanilla planifolia HOM05D001061 ORTHO05D006808 6.5e-39 164.5 151 54.3
C03p38100 Brassica napus HOM05D001061 ORTHO05D006808 8.5e-39 164.1 149 55.0
MBI19_g17401_MAGBIO Magnolia biondii HOM05D001061 ORTHO05D006808 1.5e-38 163.3 150 58.7
BcaB01g02414 Brassica carinata HOM05D001061 ORTHO05D006808 5.5e-38 161.4 149 54.4
CDE02G2952 Ceratophyllum demersum HOM05D001061 ORTHO05D006808 2.7e-37 159.1 145 55.9
SGA_v2.0_scaffold334G49065 Striga asiatica HOM05D001061 ORTHO05D006808 1.8e-36 156.4 150 54.0
DCAR_018314 Daucus carota HOM05D001061 ORTHO05D006808 3.0e-36 155.6 188 47.3
Aa31LG5G1700 Aethionema arabicum HOM05D001061 ORTHO05D006808 4.0e-36 155.2 139 54.7
unitig_85.g27181 Utricularia gibba HOM05D001061 ORTHO05D006808 4.8e-34 148.3 150 50.7
SEGI_09145 Sequoiadendron giganteum HOM05D001061 ORTHO05D006808 2.0e-32 142.9 153 46.4
Zm00001eb312280 Zea mays HOM05D001061 ORTHO05D006808 2.7e-32 142.5 148 47.3
Pp3c20_1350 Physcomitrium patens HOM05D001061 ORTHO05D006808 3.0e-28 129.0 139 42.4
CBR_g41117 Chara braunii HOM05D001061 ORTHO05D006808 5.7e-27 124.8 137 43.1
SMO116G0402 Selaginella moellendorffii HOM05D001061 ORTHO05D006808 8.3e-26 120.9 131 43.5
AagrBONN_evm.TU.Sc2ySwM_228.348 Anthoceros agrestis HOM05D001061 ORTHO05D006808 3.1e-25 119.0 151 37.7
Mapoly0042s0086 Marchantia polymorpha HOM05D001061 ORTHO05D006808 3.5e-24 115.5 153 38.6
AUR62034679 Chenopodium quinoa HOM05D001061 ORTHO05D006808 2.0e-16 89.7 61 62.3
SHI20112 Sapria himalayana HOM05D001061 ORTHO05D006808 1.3e-15 87.0 133 39.8
PRCOL_00003897 Prasinoderma coloniale HOM05D001061 ORTHO05D006808 2.9e-15 85.9 118 34.7
FAN06G3919 Fragaria x ananassa HOM05D001061 ORTHO05D021366 3.3e-14 82.4 56 69.6
Cfa027179 Carpinus fangiana HOM05D001061 ORTHO05D007103 3.5e-08 62.4 119 27.7
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 5.9e-08 61.6 53 50.9
Aqoxy2G01549 Aquilegia oxysepala HOM05D001061 ORTHO05D006808 1.0e-07 60.8 68 50.0


User provided reference genes

Program Settings