Gene: COL.COLO4_23240
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_23240
- Transcript Identifier COL.rna21981
- Gene Type Coding gene
- Location AWUE01018173.1 : 147786-155994 : positive
Gene Family Information
- ID HOM05D001061
- #Genes/#Species 575/100
- Phylogenetic origin
- ID ORTHO05D006808
- #Genes/#Species 138/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna21981
- GenBank OMO82133.1
- id gene23212
- gene_name COLO4_23240
- uniprot A0A1R3IHV7
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006298 | IEA | GOA Database | mismatch repair | |
| GO:0006298 | IEA | InterPro | mismatch repair | |
| GO:0006290 | ISO | PLAZA Integrative Orthology | pyrimidine dimer repair | AT4G02070 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030983 | IEA | GOA Database | mismatched DNA binding | |
| GO:0030983 | IEA | InterPro | mismatched DNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G02070 |
| GO:0003684 | ISO | PLAZA Integrative Orthology | damaged DNA binding | AT4G02070 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036678 | MutS, connector domain superfamily |
| IPR045076 | DNA mismatch repair MutS family |
| IPR036187 | DNA mismatch repair protein MutS, core domain superfamily |
| IPR002999 | Tudor domain |
| IPR007696 | DNA mismatch repair protein MutS, core |
| IPR000432 | DNA mismatch repair protein MutS, C-terminal |
| IPR007860 | DNA mismatch repair protein MutS, connector domain |
| IPR007861 | DNA mismatch repair protein MutS, clamp |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR016151 | DNA mismatch repair protein MutS, N-terminal |
| IPR017261 | DNA mismatch repair protein MutS/MSH |
| IPR007695 | DNA mismatch repair protein MutS-like, N-terminal |
| Mapman id | Description |
|---|---|
| 14.7.1.3 | DNA damage response.mismatch repair (MMR).MSH2-x mismatch repair heterodimer components.component MSH6 |