Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 5.4e-130 467.6 229 100.0
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 2.3e-104 382.5 229 81.7
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 1.7e-86 323.2 157 98.7
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 2.6e-84 315.8 219 67.6
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.5e-84 315.1 225 68.0
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 7.7e-84 314.3 218 69.3
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 1.7e-83 313.2 216 67.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 2.2e-83 312.8 228 66.2
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 1.9e-82 309.7 216 69.0
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 9.4e-82 307.4 218 67.4
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 9.4e-82 307.4 218 68.3
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.6e-81 306.6 217 69.6
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 2.1e-81 306.2 217 69.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 4.7e-81 305.1 218 67.4
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.9e-81 304.3 216 68.1
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 3.0e-80 302.4 217 68.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 5.1e-80 301.6 215 68.4
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 5.1e-80 301.6 216 66.7
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.0e-79 299.7 216 68.1
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.0e-79 299.7 219 66.7
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 5.7e-79 298.1 216 64.4
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.3e-78 297.0 229 62.4
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 1.3e-78 297.0 216 68.1
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 4.8e-78 295.0 216 63.9
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 8.2e-78 294.3 216 64.4
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.2e-78 294.3 229 63.8
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.4e-77 293.5 216 64.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.8e-77 293.1 218 63.8
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 4.1e-77 292.0 219 65.3
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 1.2e-76 290.4 222 62.2
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-76 290.0 218 63.3
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 1.5e-76 290.0 217 65.0
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 3.5e-76 288.9 216 63.4
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 5.9e-76 288.1 228 63.2
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.7e-76 287.7 228 63.2
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.0e-75 287.3 216 63.4
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.0e-75 287.3 229 62.9
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.2e-75 286.2 216 64.8
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 2.9e-75 285.8 216 62.5
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 2.9e-75 285.8 218 61.9
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 3.8e-75 285.4 228 62.3
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.8e-75 285.4 218 63.8
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.0e-75 285.0 217 63.6
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 8.5e-75 284.3 217 63.1
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.1e-74 283.9 224 61.2
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.4e-74 283.5 219 65.3
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.4e-74 283.5 220 61.8
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 1.4e-74 283.5 216 64.8
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.9e-74 283.1 228 62.3
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.2e-74 282.0 227 60.4
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 4.2e-74 282.0 219 63.9
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 4.2e-74 282.0 226 63.3
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 4.2e-74 282.0 217 63.1
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.5e-74 281.6 218 61.9
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 5.5e-74 281.6 218 61.9
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 5.5e-74 281.6 228 62.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 7.2e-74 281.2 228 62.7
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 9.4e-74 280.8 228 60.1
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.6e-73 280.0 216 62.0
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.7e-73 279.3 224 61.6
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 3.6e-73 278.9 216 63.0
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 8.0e-73 277.7 217 61.8
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.8e-72 276.6 232 57.8
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 3.0e-72 275.8 219 62.6
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.7e-72 274.6 228 61.4
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 8.8e-72 274.2 226 58.0
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.1e-71 273.9 215 60.9
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.3e-71 272.3 217 59.9
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 4.4e-71 271.9 217 60.4
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 5.7e-71 271.6 219 61.2
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 9.7e-71 270.8 217 60.8
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 2.2e-70 269.6 217 59.0
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 2.8e-70 269.2 219 60.3
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.8e-70 268.5 215 59.5
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 1.1e-69 267.3 216 60.6
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.4e-69 266.9 218 59.6
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.1e-69 265.8 224 58.9
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.1e-69 265.8 224 58.9
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 4.1e-69 265.4 219 60.3
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 5.3e-69 265.0 217 58.5
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 7.0e-69 264.6 216 58.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.0e-69 264.6 217 59.9
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 7.0e-69 264.6 217 59.9
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.6e-68 263.5 220 60.5
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 4.5e-68 261.9 210 57.1
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 5.9e-68 261.5 235 59.1
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.7e-68 261.2 217 59.9
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.3e-67 260.4 216 58.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.1e-66 257.3 221 57.5
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 1.5e-66 256.9 218 58.7
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 1.9e-66 256.5 220 56.8
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 5.5e-66 255.0 219 58.0
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.2e-65 253.8 219 57.5
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.1e-65 251.5 188 63.3
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 6.1e-65 251.5 228 55.3
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.0e-64 250.8 228 57.0
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 1.8e-64 250.0 233 54.9
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.8e-64 248.1 188 63.3
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 1.2e-63 247.3 224 55.4
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.5e-63 246.9 218 56.4
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 5.7e-63 245.0 219 53.9
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 9.7e-63 244.2 230 56.1
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.2e-62 243.0 220 55.0
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.8e-62 242.7 198 60.6
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 3.7e-62 242.3 221 53.4
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 3.7e-62 242.3 222 55.0
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.7e-62 242.3 224 54.0
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 6.3e-62 241.5 187 63.1
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 1.1e-61 240.7 229 52.8
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 1.1e-61 240.7 229 52.8
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 1.4e-61 240.4 226 54.9
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.8e-61 240.0 219 54.3
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 2.4e-61 239.6 221 53.8
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.4e-61 239.6 218 53.2
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 2.4e-61 239.6 229 53.7
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.1e-61 239.2 225 53.3
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.3e-61 238.4 224 51.8
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 5.3e-61 238.4 229 52.8
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 5.3e-61 238.4 224 53.1
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 9.1e-61 237.7 228 54.8
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.2e-60 237.3 220 53.2
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 1.6e-60 236.9 230 51.7
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-60 236.1 226 52.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.7e-60 236.1 226 52.7
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.3e-59 233.8 220 54.1
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 1.3e-59 233.8 224 53.1
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.7e-59 233.4 224 52.7
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 2.9e-59 232.6 224 51.3
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.9e-59 232.6 185 59.5
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 2.9e-59 232.6 230 52.2
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 6.5e-59 231.5 211 54.0
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 8.5e-59 231.1 214 54.2
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 1.1e-58 230.7 206 57.3
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 2.5e-58 229.6 226 51.3
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 3.2e-58 229.2 234 51.3
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 5.5e-58 228.4 220 51.4
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 5.5e-58 228.4 236 50.4
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 7.2e-58 228.0 229 51.1
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 7.2e-58 228.0 229 51.1
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 7.2e-58 228.0 219 54.8
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 6.1e-57 224.9 218 53.7
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 1.0e-56 224.2 218 53.7
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 5.2e-56 221.9 241 51.5
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 8.8e-56 221.1 215 50.7
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.5e-55 220.3 162 64.2
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 1.5e-55 220.3 220 49.1
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 2.0e-55 219.9 217 52.5
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.4e-55 218.8 198 54.5
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 8.3e-54 214.5 220 54.1
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 8.6e-51 204.5 229 48.9
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 4.2e-50 202.2 205 52.2
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.7e-49 198.7 155 59.4
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 3.0e-48 196.1 215 50.2
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 8.9e-48 194.5 161 60.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 9.2e-45 184.5 229 43.2
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 2.3e-43 179.9 228 46.1
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 2.5e-42 176.4 226 43.4
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.6e-41 172.6 145 55.2
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 8.0e-41 171.4 236 41.1
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 3.1e-40 169.5 184 50.5
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 3.4e-39 166.0 145 53.1
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.4e-37 160.6 139 58.3
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 5.4e-37 158.7 116 66.4
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.3e-35 154.1 191 45.5
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 1.5e-34 150.6 101 70.3
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.6e-33 147.1 107 63.6
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.6e-31 139.8 120 58.3
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 3.2e-29 132.9 145 49.0
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 1.6e-25 120.6 166 39.2
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 2.6e-23 113.2 112 50.0
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 4.9e-22 109.0 190 34.2
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-20 104.4 89 55.1
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 1.2e-20 104.4 88 52.3
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 1.6e-20 104.0 72 68.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 2.3e-19 100.1 143 42.7
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 3.6e-17 92.8 174 32.2
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.8e-16 90.5 98 45.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 7.6e-15 85.1 77 54.5
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 2.2e-14 83.6 87 48.3
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 3.5e-12 76.3 61 54.1
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 3.6e-09 66.2 247 23.1
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 5.3e-08 62.4 196 26.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 6.9e-08 62.0 71 45.1
Medtr4g119190 Medicago truncatula HOM05D003786 ORTHO05D004375 8.4e-06 55.1 44 56.8


User provided reference genes

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