Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 6.9e-195 685.3 959 100.0
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 3.1e-142 510.4 965 86.7
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.0e-109 401.4 285 75.8
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 2.6e-109 401.0 363 65.0
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.3e-108 398.7 363 64.7
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.0e-106 389.8 366 64.5
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.9e-105 387.1 366 65.6
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.6e-101 374.4 302 64.2
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 6.4e-100 369.8 359 59.3
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 9.3e-99 365.9 354 61.0
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.9e-96 358.2 356 61.8
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.7e-95 354.0 305 65.2
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.0e-92 345.9 293 63.5
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.0e-92 345.9 357 56.3
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 4.9e-92 343.6 304 66.4
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.1e-91 342.4 354 57.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 7.1e-91 339.7 300 62.0
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.8e-89 335.1 368 55.2
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.1e-88 332.4 359 56.8
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.5e-88 332.0 367 56.1
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.9e-88 331.6 324 56.2
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 3.3e-88 330.9 369 55.8
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.3e-88 330.9 360 56.9
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 4.3e-88 330.5 357 59.4
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 9.6e-88 329.3 365 57.5
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 1.6e-87 328.6 302 62.3
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 3.7e-87 327.4 314 60.2
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 8.2e-87 326.2 300 62.0
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.4e-86 325.5 282 62.1
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 3.1e-86 324.3 301 64.5
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 3.1e-86 324.3 359 55.7
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 4.1e-86 323.9 282 67.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 5.3e-86 323.6 257 70.4
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 5.3e-86 323.6 257 70.4
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.6e-85 321.2 381 54.1
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.4e-85 320.9 279 61.3
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.5e-85 320.5 357 56.3
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.2e-84 318.2 348 61.8
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 2.9e-84 317.8 240 70.0
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 3.8e-84 317.4 315 61.9
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.0e-84 317.0 356 52.0
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.4e-83 315.5 363 53.4
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.9e-83 315.1 195 76.4
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 1.9e-83 315.1 379 51.2
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.9e-83 315.1 278 64.4
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 7.2e-83 313.2 361 54.8
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 2.1e-82 311.6 246 71.1
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 3.6e-82 310.8 375 51.2
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 4.6e-82 310.5 299 59.9
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 4.6e-82 310.5 254 61.0
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 7.9e-82 309.7 302 63.6
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.3e-81 308.1 352 54.8
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 5.1e-81 307.0 299 58.5
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.7e-81 306.6 269 62.8
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 2.5e-80 304.7 331 55.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 4.3e-80 303.9 298 62.4
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.3e-80 303.9 302 57.6
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.3e-79 302.4 369 53.1
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.3e-79 302.4 352 54.5
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.6e-79 302.0 299 57.9
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.2e-79 301.6 317 53.9
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 2.2e-79 301.6 300 59.0
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 3.7e-79 300.8 355 55.2
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 3.7e-79 300.8 296 53.7
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 8.2e-79 299.7 355 55.5
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 6.9e-78 296.6 306 53.3
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 9.1e-78 296.2 325 49.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 9.1e-78 296.2 296 61.5
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.2e-77 295.8 316 55.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.5e-77 295.4 316 55.4
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.5e-77 295.4 359 46.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.7e-76 292.0 364 55.8
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 1.4e-75 288.9 289 60.9
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.2e-75 286.6 270 60.7
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.8e-73 282.0 364 51.1
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 3.9e-73 280.8 359 50.1
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.1e-72 279.3 372 49.2
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 2.6e-72 278.1 366 52.5
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 9.7e-72 276.2 303 54.8
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.7e-71 275.4 305 55.4
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 2.2e-71 275.0 283 55.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 4.1e-70 270.8 309 54.4
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 3.4e-69 267.7 367 49.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 5.9e-69 266.9 195 68.2
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 5.9e-69 266.9 244 61.5
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 7.7e-69 266.5 368 47.8
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.7e-68 265.4 305 57.0
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.5e-68 263.5 295 53.9
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.4e-65 255.8 282 56.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.3e-65 255.0 282 56.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 8.8e-65 253.1 321 45.5
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.5e-61 241.1 325 53.2
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.1e-59 236.1 142 80.3
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 4.2e-59 234.2 144 77.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 1.6e-58 232.3 303 46.5
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 8.0e-58 229.9 151 73.5
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 2.8e-55 221.5 187 58.8
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 6.3e-55 220.3 244 52.9
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.8e-52 211.1 188 55.9
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.6e-48 198.4 126 76.2
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.6e-48 198.4 189 63.5
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.5e-43 182.6 126 72.2
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 3.2e-43 181.4 211 44.1
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.4e-41 176.0 194 43.8
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.2e-41 174.1 183 47.0
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 9.2e-38 163.3 104 76.9
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.8e-33 147.1 182 44.5
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 8.9e-33 146.7 112 67.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.6e-32 145.2 182 44.0
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 9.8e-32 143.3 109 67.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.7e-31 141.4 83 80.7
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.8e-30 139.0 111 63.1
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.4e-30 138.7 96 68.8
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.1e-30 137.9 109 64.2
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 5.4e-30 137.5 112 65.2
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 9.2e-30 136.7 207 38.6
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-29 136.3 80 80.0
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.6e-29 136.0 114 63.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.0e-28 133.3 206 39.3
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.3e-28 132.9 104 65.4
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 5.0e-28 131.0 91 70.3
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 6.6e-28 130.6 99 64.6
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 8.6e-28 130.2 201 34.3
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.7e-26 124.4 74 77.0
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 6.8e-25 120.6 118 55.9
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.8e-24 117.5 81 69.1
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 8.3e-23 113.6 81 64.2
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.4e-22 112.1 76 60.5
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 8.6e-20 103.6 72 70.8
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 2.8e-18 98.6 59 76.3
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 5.4e-14 84.3 43 93.0
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 9.2e-14 83.6 81 55.6
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 2.1e-13 82.4 64 64.1
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.8e-13 80.5 43 81.4
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.3e-11 75.1 160 30.6
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.8e-09 69.3 45 75.6
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 4.0e-09 68.2 44 72.7
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 4.0e-09 68.2 44 72.7
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 3.8e-07 61.6 187 26.2
TWI39G0379 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 1.1e-06 60.1 105 41.0
Os07g0663300 Oryza sativa ssp. japonica HOM05D001495 ORTHO05D001391 2.4e-06 58.9 92 37.0
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 3.2e-06 58.5 150 32.0
Oeu035637.1 Olea europaea HOM05D000142 ORTHO05D007638 4.1e-06 58.2 115 32.2
Lalb_Chr07g0183131 Lupinus albus HOM05D000142 ORTHO05D001253 5.4e-06 57.8 109 36.7
Glyma.05G043200 Glycine max HOM05D000142 ORTHO05D001253 7.1e-06 57.4 165 33.3
unitig_26.g8808 Utricularia gibba HOM05D000111 ORTHO05D007645 7.1e-06 57.4 124 35.5
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 9.2e-06 57.0 78 38.5


User provided reference genes

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