Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1314900 Malus domestica HOM05D005208 ORTHO05D006415 7.8e-52 206.8 103 100.0
FvH4_7g00800 Fragaria vesca HOM05D005208 ORTHO05D006415 5.6e-34 147.5 89 85.4
MD07G1007200 Malus domestica HOM05D005208 ORTHO05D006415 2.8e-33 145.2 72 100.0
RcHm_v2.0_Chr1g0314961 Rosa chinensis HOM05D005208 ORTHO05D006415 2.8e-33 145.2 72 100.0
TAR369G0402 Trochodendron aralioides HOM05D005208 ORTHO05D006415 3.6e-33 144.8 72 98.6
FAN03G3338 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.7e-33 144.4 72 98.6
FAN06G3906 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.7e-33 144.4 72 98.6
FAN10G1294 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.7e-33 144.4 72 98.6
DCAR_006299 Daucus carota HOM05D005208 ORTHO05D006415 6.2e-33 144.1 72 98.6
Potri.001G269500 Populus trichocarpa HOM05D005208 ORTHO05D006415 6.2e-33 144.1 72 98.6
Potri.009G064000 Populus trichocarpa HOM05D005208 ORTHO05D006415 6.2e-33 144.1 72 98.6
Sabra09G0047300 Salix brachista HOM05D005208 ORTHO05D006415 6.2e-33 144.1 72 98.6
Gohir.A08G027400 Gossypium hirsutum HOM05D005208 ORTHO05D006415 8.1e-33 143.7 72 98.6
Gohir.D08G038100 Gossypium hirsutum HOM05D005208 ORTHO05D006415 8.1e-33 143.7 72 98.6
Gorai.004G036100 Gossypium raimondii HOM05D005208 ORTHO05D006415 8.1e-33 143.7 72 98.6
Actinidia36719 Actinidia chinensis HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
arahy.Tifrunner.gnm1.ann1.SLE1RG Arachis hypogaea HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
CSS0039411 Camellia sinensis var. sinensis HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
Carub.0005s0302 Capsella rubella HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
CiPaw.13G163800 Carya illinoinensis HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
Eucgr.K01365 Eucalyptus grandis HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
Lalb_Chr12g0205961 Lupinus albus HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 97.2
PGR119G1849 Punica granatum HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
Sed0001189 Sechium edule HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 97.2
Thecc.01G413400 Theobroma cacao HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
TWI14G0133 Tripterygium wilfordii HOM05D005208 ORTHO05D006415 1.1e-32 143.3 72 98.6
Haze_23082 Corylus avellana HOM05D005208 ORTHO05D006415 1.4e-32 142.9 72 97.2
Dinv43460 Davidia involucrata HOM05D005208 ORTHO05D006415 1.4e-32 142.9 72 97.2
Nn7g36187 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.4e-32 142.9 72 97.2
PSO447G0208 Papaver somniferum HOM05D005208 ORTHO05D006415 1.4e-32 142.9 72 98.6
Atru.chr11.2641 Acer truncatum HOM05D005208 ORTHO05D006415 1.8e-32 142.5 72 97.2
Ciclev10033061m.g Citrus clementina HOM05D005208 ORTHO05D006415 1.8e-32 142.5 72 97.2
Nn2g15393 Nelumbo nucifera HOM05D005208 ORTHO05D006415 1.8e-32 142.5 77 92.2
AL5G13680 Arabidopsis lyrata HOM05D005208 ORTHO05D006415 2.3e-32 142.1 72 97.2
AT2G03870 Arabidopsis thaliana HOM05D005208 ORTHO05D006415 2.3e-32 142.1 72 97.2
Manes.10G145800 Manihot esculenta HOM05D005208 ORTHO05D006415 2.3e-32 142.1 72 97.2
Manes.10G146000 Manihot esculenta HOM05D005208 ORTHO05D006415 2.3e-32 142.1 72 97.2
Sp2g14670 Schrenkiella parvula HOM05D005208 ORTHO05D006415 2.3e-32 142.1 72 97.2
CANSAT11G1283 Cannabis sativa HOM05D005208 ORTHO05D006415 3.1e-32 141.7 72 97.2
CARHR146260 Cardamine hirsuta HOM05D005208 ORTHO05D006415 3.1e-32 141.7 72 95.8
Phvul.L003846 Phaseolus vulgaris HOM05D005208 ORTHO05D006415 3.1e-32 141.7 72 97.2
Sc09g0000550 Simmondsia chinensis HOM05D005208 ORTHO05D006415 3.1e-32 141.7 72 95.8
VMungo1127G1122 Vigna mungo HOM05D005208 ORTHO05D006415 3.1e-32 141.7 72 97.2
MSTRG.5012 Avicennia marina HOM05D005208 ORTHO05D006415 4.0e-32 141.4 72 95.8
COL.COLO4_23915 Corchorus olitorius HOM05D005208 ORTHO05D006415 4.0e-32 141.4 71 98.6
Duzib268G0815 Durio zibethinus HOM05D005208 ORTHO05D006415 4.0e-32 141.4 72 95.8
FAN01G2640 Fragaria x ananassa HOM05D005208 ORTHO05D006415 4.0e-32 141.4 72 97.2
Glyma.05G149300 Glycine max HOM05D005208 ORTHO05D006415 4.0e-32 141.4 72 97.2
Glyma.08G105900 Glycine max HOM05D005208 ORTHO05D006415 4.0e-32 141.4 72 97.2
Duzib138G0119 Durio zibethinus HOM05D005208 ORTHO05D006415 5.2e-32 141.0 72 95.8
Medtr7g065100 Medicago truncatula HOM05D005208 ORTHO05D006415 5.2e-32 141.0 72 97.2
Psat4g195040 Pisum sativum HOM05D005208 ORTHO05D006415 5.2e-32 141.0 72 97.2
TAR633G0908 Trochodendron aralioides HOM05D005208 ORTHO05D006415 5.2e-32 141.0 71 97.2
AUR62007315 Chenopodium quinoa HOM05D005208 ORTHO05D006415 6.8e-32 140.6 72 95.8
AUR62018690 Chenopodium quinoa HOM05D005208 ORTHO05D006415 6.8e-32 140.6 72 95.8
Cc02_g27590 Coffea canephora HOM05D005208 ORTHO05D006415 6.8e-32 140.6 72 94.4
CsaV3_3G032260 Cucumis sativus L. HOM05D005208 ORTHO05D006415 6.8e-32 140.6 72 97.2
Prupe.2G010100 Prunus persica HOM05D005208 ORTHO05D006415 6.8e-32 140.6 71 98.6
Sc20g0007120 Simmondsia chinensis HOM05D005208 ORTHO05D006415 6.8e-32 140.6 72 97.2
Ah.12g055270 Amaranthus hybridus HOM05D005208 ORTHO05D006415 8.9e-32 140.2 72 95.8
ClCG10G012490 Citrullus lanatus HOM05D005208 ORTHO05D006415 8.9e-32 140.2 72 95.8
Dinv09372 Davidia involucrata HOM05D005208 ORTHO05D006415 8.9e-32 140.2 72 95.8
ECA234G2562 Erigeron canadensis HOM05D005208 ORTHO05D006415 8.9e-32 140.2 72 95.8
MBI11_g24620_MAGBIO Magnolia biondii HOM05D005208 ORTHO05D006415 8.9e-32 140.2 71 97.2
Oeu064261.1 Olea europaea HOM05D005208 ORTHO05D006415 8.9e-32 140.2 72 95.8
ECA234G4110 Erigeron canadensis HOM05D005208 ORTHO05D006415 1.5e-31 139.4 72 94.4
QL04p005416 Quercus lobata HOM05D005208 ORTHO05D006415 1.5e-31 139.4 73 97.3
Hund19747 Selenicereus undatus HOM05D005208 ORTHO05D006415 1.5e-31 139.4 72 94.4
HPP92_022787 Vanilla planifolia HOM05D005208 ORTHO05D006415 1.5e-31 139.4 72 93.1
Thhalv10005187m.g Eutrema salsugineum HOM05D005208 ORTHO05D006415 2.0e-31 139.0 72 95.8
SalBow4G0699 Salvia bowleyana HOM05D005208 ORTHO05D006415 2.0e-31 139.0 72 95.8
THA.LOC104809874 Tarenaya hassleriana HOM05D005208 ORTHO05D006415 2.0e-31 139.0 72 95.8
GSVIVG01032062001 Vitis vinifera HOM05D005208 ORTHO05D006415 2.0e-31 139.0 71 97.2
arahy.Tifrunner.gnm1.ann1.V9LFMD Arachis hypogaea HOM05D005208 ORTHO05D006415 2.6e-31 138.7 75 93.3
QL02p017788 Quercus lobata HOM05D005208 ORTHO05D006415 2.6e-31 138.7 73 97.3
CDE04G0027 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 3.4e-31 138.3 72 93.1
CDE07G1423 Ceratophyllum demersum HOM05D005208 ORTHO05D006415 3.4e-31 138.3 72 93.1
Ca_27575_v3 Cicer arietinum L. HOM05D005208 ORTHO05D006415 3.4e-31 138.3 72 94.4
Oeu039120.1 Olea europaea HOM05D005208 ORTHO05D006415 3.4e-31 138.3 71 95.8
Lj3g0003154 Lotus japonicus HOM05D005208 ORTHO05D006415 4.4e-31 137.9 72 95.8
HanXRQChr16g0519561 Helianthus annuus HOM05D005208 ORTHO05D006415 5.8e-31 137.5 72 94.4
Peaxi162Scf00200g01315 Petunia axillaris HOM05D005208 ORTHO05D006415 5.8e-31 137.5 72 93.1
Hund22069 Selenicereus undatus HOM05D005208 ORTHO05D006415 5.8e-31 137.5 70 95.7
ATR0605G393 Amborella trichopoda HOM05D005208 ORTHO05D006415 7.5e-31 137.1 71 94.4
BcaC03g17248 Brassica carinata HOM05D005208 ORTHO05D006415 9.9e-31 136.7 72 94.4
C02p51820 Brassica napus HOM05D005208 ORTHO05D013951 9.9e-31 136.7 72 94.4
BolC2t11268H Brassica oleracea HOM05D005208 ORTHO05D006415 9.9e-31 136.7 72 94.4
PSO210G4938 Papaver somniferum HOM05D005208 ORTHO05D006415 9.9e-31 136.7 69 98.6
CiPaw.13G003300 Carya illinoinensis HOM05D005208 ORTHO05D006415 1.3e-30 136.3 73 94.5
Medtr8g036205 Medicago truncatula HOM05D005208 ORTHO05D006415 1.3e-30 136.3 72 94.4
Aqoxy5G03601_Aqoxy5G03602 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 1.7e-30 136.0 70 97.1
Migut.H01631 Erythranthe guttata HOM05D005208 ORTHO05D006415 2.2e-30 135.6 72 91.7
BcaC06g31141 Brassica carinata HOM05D005208 ORTHO05D006415 2.9e-30 135.2 72 93.1
Lalb_Chr25g0283181 Lupinus albus HOM05D005208 ORTHO05D006415 3.7e-30 134.8 72 91.7
Solyc09g009640.3 Solanum lycopersicum HOM05D005208 ORTHO05D006415 3.7e-30 134.8 72 93.1
Sopen09g004410 Solanum pennellii HOM05D005208 ORTHO05D006415 3.7e-30 134.8 72 93.1
PGSC0003DMG400002694 Solanum tuberosum HOM05D005208 ORTHO05D006415 3.7e-30 134.8 72 93.1
A02p33690 Brassica napus HOM05D005208 ORTHO05D006415 4.9e-30 134.4 72 93.1
BraA02t08388Z Brassica rapa HOM05D005208 ORTHO05D006415 4.9e-30 134.4 72 93.1
SEGI_02845 Sequoiadendron giganteum HOM05D005208 ORTHO05D006415 4.9e-30 134.4 69 95.7
Lj4g0005394 Lotus japonicus HOM05D005208 ORTHO05D006415 6.4e-30 134.0 71 93.0
Rhsim07G0054400 Rhododendron simsii HOM05D005208 ORTHO05D006415 6.4e-30 134.0 82 84.1
BcaB07g30643 Brassica carinata HOM05D005208 ORTHO05D006415 8.3e-30 133.7 72 93.1
A06p42830 Brassica napus HOM05D005208 ORTHO05D006415 1.1e-29 133.3 71 93.0
C07p34250 Brassica napus HOM05D005208 ORTHO05D006415 1.1e-29 133.3 71 93.0
CAN.G397.27 Capsicum annuum HOM05D005208 ORTHO05D006415 1.4e-29 132.9 71 93.0
Aqoxy6G00475 Aquilegia oxysepala HOM05D005208 ORTHO05D006415 1.9e-29 132.5 70 95.7
vmacro07761 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 2.4e-29 132.1 82 84.1
BolC7t43954H Brassica oleracea HOM05D005208 ORTHO05D006415 3.2e-29 131.7 70 92.9
BraA06t27195Z Brassica rapa HOM05D005208 ORTHO05D006415 3.2e-29 131.7 70 92.9
Mapoly0087s0020 Marchantia polymorpha HOM05D005208 ORTHO05D006415 3.2e-29 131.7 72 91.7
Nitab4.5_0002068g0050 Nicotiana tabacum HOM05D005208 ORTHO05D006415 3.2e-29 131.7 72 90.3
Pp3c8_4480 Physcomitrium patens HOM05D005208 ORTHO05D006415 3.2e-29 131.7 72 90.3
Os08g0177700 Oryza sativa ssp. japonica HOM05D005208 ORTHO05D006415 1.2e-28 129.8 72 88.9
SMO141G0024 Selaginella moellendorffii HOM05D005208 ORTHO05D006415 1.2e-28 129.8 72 87.5
SGA_v2.0_scaffold4G02254 Striga asiatica HOM05D005208 ORTHO05D006415 1.6e-28 129.4 82 82.9
Haze_03233 Corylus avellana HOM05D005208 ORTHO05D006415 2.1e-28 129.0 85 82.4
AagrBONN_evm.TU.Sc2ySwM_368.1897 Anthoceros agrestis HOM05D005208 ORTHO05D006415 2.7e-28 128.6 72 88.9
Pp3c4_9640 Physcomitrium patens HOM05D005208 ORTHO05D006415 2.7e-28 128.6 72 87.5
Aa31LG2G6760 Aethionema arabicum HOM05D005208 ORTHO05D006415 4.6e-28 127.9 94 73.4
AagrBONN_evm.TU.Sc2ySwM_117.3183 Anthoceros agrestis HOM05D005208 ORTHO05D006415 4.6e-28 127.9 72 87.5
Glyma.12G239000 Glycine max HOM05D005208 ORTHO05D006415 7.8e-28 127.1 71 93.0
Zm00001eb069280 Zea mays HOM05D005208 ORTHO05D006415 1.7e-27 125.9 72 84.7
EL10Ac7g17127 Beta vulgaris HOM05D005208 ORTHO05D006415 3.0e-27 125.2 97 70.1
Zm00001eb431700 Zea mays HOM05D005208 ORTHO05D006415 8.6e-27 123.6 72 84.7
MCO14G462 Micromonas commoda HOM05D005208 ORTHO05D006415 1.2e-25 119.8 71 80.3
vmacro00152 Vaccinium macrocarpon HOM05D005208 ORTHO05D006415 2.8e-25 118.6 113 61.1
BolC7t45182H Brassica oleracea HOM05D005208 ORTHO05D006415 6.8e-24 114.0 65 87.7
Nitab4.5_0023856g0010 Nicotiana tabacum HOM05D005208 ORTHO05D006415 6.8e-24 114.0 62 88.7
Cre03.g164101 Chlamydomonas reinhardtii HOM05D005208 ORTHO05D006415 7.6e-23 110.5 73 71.2
Sed0010704 Sechium edule HOM05D005208 ORTHO05D006415 1.3e-22 109.8 89 69.7
Sabra16G0165100 Salix brachista HOM05D005208 ORTHO05D006415 5.4e-21 104.4 144 47.9
MELO3C000014.2 Cucumis melo HOM05D005208 ORTHO05D006415 7.1e-21 104.0 52 98.1
Cpa.g.sc3559.1 Carica papaya HOM05D005208 ORTHO05D006415 2.1e-20 102.4 51 100.0
PRCOL_00006352 Prasinoderma coloniale HOM05D000731 ORTHO05D005852 3.9e-19 98.2 72 68.1
Haze_27705 Corylus avellana HOM05D005208 ORTHO05D006415 1.6e-17 92.8 69 59.4
TPR.G21719 Trifolium pratense HOM05D005208 ORTHO05D006415 1.2e-15 86.7 44 95.5
Migut.N01478 Erythranthe guttata HOM05D005208 ORTHO05D006415 2.2e-14 82.4 72 63.9
Pp3c3_27830 Physcomitrium patens HOM05D005208 ORTHO05D006415 9.3e-13 77.0 70 64.3
Actinidia31052 Actinidia chinensis HOM05D005208 ORTHO05D006415 1.3e-11 73.2 50 74.0
unitig_8.g3625 Utricularia gibba HOM05D007237 ORTHO05D008854 3.0e-11 72.0 35 100.0
TPR.G34585 Trifolium pratense HOM05D000107 ORTHO05D000062 1.6e-09 66.2 34 94.1
MELO3C030676.2 Cucumis melo HOM05D005208 ORTHO05D006415 6.9e-08 60.8 32 93.8
Sabra01G0090000 Salix brachista HOM05D005208 ORTHO05D009147 3.4e-07 58.5 28 100.0
CAN.G1433.22 Capsicum annuum HOM05D003494 ORTHO05D004033 3.8e-06 55.1 40 57.5
Gohir.A04G061800 Gossypium hirsutum HOM05D003494 ORTHO05D004033 3.8e-06 55.1 43 53.5
Solyc05g055260.4 Solanum lycopersicum HOM05D003494 ORTHO05D004033 3.8e-06 55.1 40 57.5
Sopen05g033700 Solanum pennellii HOM05D003494 ORTHO05D004033 3.8e-06 55.1 40 57.5
PGSC0003DMG400023392 Solanum tuberosum HOM05D003494 ORTHO05D004033 3.8e-06 55.1 40 57.5
AL4G13960 Arabidopsis lyrata HOM05D003494 ORTHO05D004033 4.9e-06 54.7 40 57.5
AT2G23930 Arabidopsis thaliana HOM05D003494 ORTHO05D004033 4.9e-06 54.7 40 57.5
EL10Ac6g14102 Beta vulgaris HOM05D005208 ORTHO05D006415 4.9e-06 54.7 28 92.9
Carub.0004s0309 Capsella rubella HOM05D003494 ORTHO05D004033 4.9e-06 54.7 40 57.5
Glyma.11G086200 Glycine max HOM05D003494 ORTHO05D004033 4.9e-06 54.7 40 55.0
CAN.G645.27 Capsicum annuum HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
Peaxi162Scf00173g00010 Petunia axillaris HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
Peaxi162Scf00519g00617 Petunia axillaris HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
Solyc11g006820.2 Solanum lycopersicum HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
Sopen11g002740 Solanum pennellii HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
PGSC0003DMG400023981 Solanum tuberosum HOM05D003494 ORTHO05D004033 6.4e-06 54.3 40 57.5
Lj1g0025547 Lotus japonicus HOM05D003494 ORTHO05D004033 8.4e-06 53.9 40 52.5
Sp3g09730 Schrenkiella parvula HOM05D003494 ORTHO05D004033 8.4e-06 53.9 44 52.3


User provided reference genes

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