Gene: Pp3c3_27830

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c3_27830
  • Transcript Identifier Pp3c3_27830V3.1
  • Gene Type Coding gene
  • Location Chr03 : 18882537-18885246 : negative

Gene Family Information

  • ID HOM05D005208
  • #Genes/#Species 145/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c3_27830V3.1
  • pacid 32940505
  • alias Pp1s157_19V6
  • alias Phypa_218413
  • uniprot A0A2K1KW95

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000956
ISO
PLAZA Homology (enrichment)nuclear-transcribed mRNA catabolic process HOM05D005208
GO:0000398
ISO
PLAZA Homology (enrichment)mRNA splicing, via spliceosome HOM05D005208

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:1990726
IBA
GOA DatabaseLsm1-7-Pat1 complex
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044641 Sm-like protein Lsm7/SmG
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
Mapman id Description
35.1 not assigned.annotated