Gene: Solyc09g009640.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc09g009640.3
  • Transcript Identifier Solyc09g009640.3.1
  • Gene Type Coding gene
  • Location SL4.0ch09 : 3088845-3090439 : positive

Gene Family Information

  • ID HOM05D005208
  • #Genes/#Species 145/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc09g009640.3.1
  • uniprot A0A3Q7ITI1
  • gene_id Solyc09g009640

Descriptions

  • Description Small nuclear ribonucleoprotein G (AHRD V3.3 *** M3A3X0_PSEFD)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000956
IEA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005688
IBA
GOA DatabaseU6 snRNP
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:1990726
IBA
GOA DatabaseLsm1-7-Pat1 complex
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR017132 Sm-like protein Lsm7
IPR010920 LSM domain superfamily
IPR001163 LSM domain, eukaryotic/archaea-type
IPR044641 Sm-like protein Lsm7/SmG
Mapman id Description
16.2.3.7 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm7