Gene: AT2G23930

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G23930
  • Transcript Identifier AT2G23930.1
  • Gene Type Coding gene
  • Location Chr2 : 10182353-10183026 : positive

Gene Family Information

  • ID HOM05D003494
  • #Genes/#Species 195/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G23930.1
  • symbol SNRNP-G
  • full_name probable small nuclear ribonucleoprotein G
  • uniprot O82221

Descriptions

  • Description Putative small nuclear ribonucleoprotein G
  • Computational description probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1247 Blast hits to 1247 proteins in 267 species: Archae - 124; Bacteria - 0; Metazoa - 472; Fungi - 280; Plants - 197; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0000387
IEA
Gene Ontologyspliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA
GOA DatabasemRNA binding
GO:0003729
HDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0071004
IBA
Gene OntologyU2-type prespliceosome1
GO:0034719
IBA
Gene OntologySMN-Sm protein complex1
GO:0005686
IBA
Gene OntologyU2 snRNP1
GO:0005689
IBA
Gene OntologyU12-type spliceosomal complex1
GO:0071011
IBA
Gene Ontologyprecatalytic spliceosome1
GO:0071013
IBA
Gene Ontologycatalytic step 2 spliceosome1
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1
GO:0043186
IBA
Gene OntologyP granule1
GO:0097526
IBA
Gene Ontologyspliceosomal tri-snRNP complex1
GO:0005687
IBA
Gene OntologyU4 snRNP1
GO:0005685
IBA
Gene OntologyU1 snRNP1
GO:0005682
IBA
Gene OntologyU5 snRNP1
GO:0005773
HDA
Gene Ontologyvacuole3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044641 Sm-like protein Lsm7/SmG
IPR001163 LSM domain, eukaryotic/archaea-type
IPR034098 Small nuclear ribonucleoprotein G
IPR010920 LSM domain superfamily
Mapman id Description
16.2.2.7 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-G