Gene: PGSC0003DMG400023392

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400023392
  • Transcript Identifier PGSC0003DMT400060122
  • Gene Type Coding gene
  • Location ST4.03ch05 : 50946076-50948804 : negative

Gene Family Information

  • ID HOM05D003494
  • #Genes/#Species 195/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37443529
  • id PGSC0003DMG400023392.v4.03
  • uniprot M1C5A0

Descriptions

  • Description Small nuclear ribonucleoprotein E
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000387
IEA
GOA Databasespliceosomal snRNP assembly
GO:0000387
IEA
InterProspliceosomal snRNP assembly
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G23930
GO:0003723
IBA
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005689
IBA
GOA DatabaseU12-type spliceosomal complex
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G11500
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G23930
GO:0097526
IBA
GOA Databasespliceosomal tri-snRNP complex
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0043186
IBA
GOA DatabaseP granule
GO:0005682
IBA
GOA DatabaseU5 snRNP
GO:0005685
IBA
GOA DatabaseU1 snRNP
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005687
IBA
GOA DatabaseU4 snRNP
GO:0034719
IBA
GOA DatabaseSMN-Sm protein complex
GO:0071004
IBA
GOA DatabaseU2-type prespliceosome
GO:0071011
IBA
GOA Databaseprecatalytic spliceosome
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR044641 Sm-like protein Lsm7/SmG
IPR034098 Small nuclear ribonucleoprotein G
Mapman id Description
16.2.2.7 RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-G