Gene: Solyc11g006820.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g006820.2
- Transcript Identifier Solyc11g006820.2.1
- Gene Type Coding gene
- Location SL4.0ch11 : 1428423-1430907 : negative
Gene Family Information
- ID HOM05D003494
- #Genes/#Species 195/95
- Phylogenetic origin
- ID ORTHO05D004033
- #Genes/#Species 194/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc11g006820.2.1
- uniprot A0A3Q7IPK6
- gene_id Solyc11g006820
Descriptions
- Description Small nuclear ribonucleoprotein G (AHRD V3.3 *** A0A1U8EW56_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IBA IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000387 | IEA | GOA Database | spliceosomal snRNP assembly | |
| GO:0000387 | IEA | InterPro | spliceosomal snRNP assembly | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G23930 |
| GO:0003723 | IBA IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005689 | IBA | GOA Database | U12-type spliceosomal complex | |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G11500 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G23930 |
| GO:0097526 | IBA | GOA Database | spliceosomal tri-snRNP complex | |
| GO:1990904 | IBA | GOA Database | ribonucleoprotein complex | |
| GO:0043186 | IBA | GOA Database | P granule | |
| GO:0005682 | IBA | GOA Database | U5 snRNP | |
| GO:0005685 | IBA | GOA Database | U1 snRNP | |
| GO:0005686 | IBA | GOA Database | U2 snRNP | |
| GO:0005687 | IBA | GOA Database | U4 snRNP | |
| GO:0034719 | IBA | GOA Database | SMN-Sm protein complex | |
| GO:0071004 | IBA | GOA Database | U2-type prespliceosome | |
| GO:0071011 | IBA | GOA Database | precatalytic spliceosome | |
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome | |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0005681 | IEA | InterPro | spliceosomal complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.2.7 | RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-G |