Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g27239_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 8.7e-142 506.9 247 100.0
MBI03_g28482_MAGBIO Magnolia biondii HOM05D003786 ORTHO05D004375 1.2e-130 469.9 247 92.7
TAR369G0701 Trochodendron aralioides HOM05D003786 ORTHO05D004375 1.3e-97 360.1 243 70.8
Ciclev10029956m.g Citrus clementina HOM05D003786 ORTHO05D004375 8.8e-94 347.4 237 67.1
CSS0045889 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.6e-90 336.7 243 66.7
Atru.chr3.3714 Acer truncatum HOM05D003786 ORTHO05D004375 2.0e-90 336.3 232 68.1
Dinv01513 Davidia involucrata HOM05D003786 ORTHO05D004375 2.0e-90 336.3 243 67.5
vmacro03165 Vaccinium macrocarpon HOM05D003786 ORTHO05D004375 2.9e-89 332.4 235 68.9
Actinidia09138 Actinidia chinensis HOM05D003786 ORTHO05D004375 5.0e-89 331.6 241 66.8
CSS0041475 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 8.5e-89 330.9 242 65.3
Manes.11G140700 Manihot esculenta HOM05D003786 ORTHO05D004375 3.2e-88 328.9 242 64.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.2e-88 328.9 237 67.1
Cpa.g.sc318.5 Carica papaya HOM05D003786 ORTHO05D004375 2.1e-87 326.2 242 62.8
Rhsim13G0091800 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-87 325.9 241 64.7
Lj2P1038T21 Lonicera japonica HOM05D003786 ORTHO05D004375 4.4e-85 318.5 244 63.1
Potri.009G131500 Populus trichocarpa HOM05D003786 ORTHO05D004375 5.7e-85 318.2 234 65.4
SalBow3G3536 Salvia bowleyana HOM05D003786 ORTHO05D004375 9.8e-85 317.4 236 63.6
QL01p036748 Quercus lobata HOM05D003786 ORTHO05D004375 1.7e-84 316.6 241 61.8
Sabra09G0101900 Salix brachista HOM05D003786 ORTHO05D004375 3.7e-84 315.5 233 65.7
Cc00_g24070 Coffea canephora HOM05D003786 ORTHO05D004375 1.1e-83 313.9 239 61.9
CSS0017411 Camellia sinensis var. sinensis HOM05D003786 ORTHO05D004375 1.4e-83 313.5 244 64.8
COL.COLO4_25255 Corchorus olitorius HOM05D003786 ORTHO05D004375 1.4e-83 313.5 239 61.1
Manes.04G025700 Manihot esculenta HOM05D003786 ORTHO05D004375 1.4e-83 313.5 242 62.4
CANSAT54G0858 Cannabis sativa HOM05D003786 ORTHO05D004375 1.8e-83 313.2 244 59.8
Sabra09G0099700 Salix brachista HOM05D003786 ORTHO05D004375 1.8e-83 313.2 233 64.8
Gorai.013G002800 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.6e-82 310.1 234 61.1
Haze_23937 Corylus avellana HOM05D003786 ORTHO05D004375 2.0e-82 309.7 241 61.0
ClCG02G020870 Citrullus lanatus HOM05D003786 ORTHO05D004375 2.7e-82 309.3 234 63.7
Haze_20932 Corylus avellana HOM05D003786 ORTHO05D004375 2.7e-82 309.3 241 60.6
TWI31G1207 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.5e-82 308.9 237 61.2
CiPaw.14G077400 Carya illinoinensis HOM05D003786 ORTHO05D004375 4.5e-82 308.5 242 60.7
Nn2g10664 Nelumbo nucifera HOM05D003786 ORTHO05D004375 4.5e-82 308.5 237 62.9
MSTRG.858 Avicennia marina HOM05D003786 ORTHO05D004375 7.7e-82 307.8 236 61.4
Prupe.6G093000 Prunus persica HOM05D003786 ORTHO05D004375 7.7e-82 307.8 235 62.1
Duzib168G0697 Durio zibethinus HOM05D003786 ORTHO05D004375 1.0e-81 307.4 242 59.9
Thecc.09G261300 Theobroma cacao HOM05D003786 ORTHO05D004375 1.0e-81 307.4 236 61.4
Gohir.A13G003000 Gossypium hirsutum HOM05D003786 ORTHO05D004375 8.6e-81 304.3 233 60.9
Gohir.D13G002900 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.1e-80 303.9 233 60.5
DCAR_006378 Daucus carota HOM05D003786 ORTHO05D004375 2.5e-80 302.8 238 59.7
TWI75G0263 Tripterygium wilfordii HOM05D003786 ORTHO05D004375 3.3e-80 302.4 242 59.5
DCAR_006383 Daucus carota HOM05D003786 ORTHO05D004375 7.2e-80 301.2 238 60.1
Eucgr.J01130 Eucalyptus grandis HOM05D003786 ORTHO05D004375 2.1e-79 299.7 233 58.8
PGR102G2306 Punica granatum HOM05D003786 ORTHO05D004375 1.0e-78 297.4 242 59.5
CsaV3_6G021540 Cucumis sativus L. HOM05D003786 ORTHO05D004375 1.8e-78 296.6 233 60.1
RcHm_v2.0_Chr3g0449171 Rosa chinensis HOM05D003786 ORTHO05D004375 1.8e-78 296.6 242 59.9
Nitab4.5_0005175g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-78 296.2 232 62.1
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 4.0e-78 295.4 245 60.4
Sc06g0010590 Simmondsia chinensis HOM05D003786 ORTHO05D004375 6.8e-78 294.7 235 60.4
Nitab4.5_0000106g0010 Nicotiana tabacum HOM05D003786 ORTHO05D004375 1.5e-77 293.5 235 60.4
Migut.D02178 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.4e-77 292.0 235 60.9
HanXRQChr12g0373371 Helianthus annuus HOM05D003786 ORTHO05D004375 9.8e-77 290.8 238 58.8
CAN.G1001.22 Capsicum annuum HOM05D003786 ORTHO05D004375 2.2e-76 289.7 232 60.8
FvH4_6g01503 Fragaria vesca HOM05D003786 ORTHO05D004375 3.7e-76 288.9 241 60.2
Lsat_1_v5_gn_2_25701 Lactuca sativa HOM05D003786 ORTHO05D004375 3.7e-76 288.9 258 57.4
Sopen06g031770 Solanum pennellii HOM05D003786 ORTHO05D004375 3.7e-76 288.9 243 58.8
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 6.3e-76 288.1 243 59.7
ATR0763G039 Amborella trichopoda HOM05D003786 ORTHO05D004375 8.3e-76 287.7 243 59.3
Solyc06g075350.3 Solanum lycopersicum HOM05D003786 ORTHO05D004375 1.4e-75 287.0 232 59.9
MD11G1123700 Malus domestica HOM05D003786 ORTHO05D004375 4.1e-75 285.4 216 63.4
PGSC0003DMG400007497 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.1e-75 285.4 243 58.4
arahy.Tifrunner.gnm1.ann1.2E7PU8 Arachis hypogaea HOM05D003786 ORTHO05D004375 7.0e-75 284.6 239 58.2
CDE05G0279 Ceratophyllum demersum HOM05D003786 ORTHO05D004375 7.0e-75 284.6 237 58.6
Sed0001350 Sechium edule HOM05D003786 ORTHO05D004375 7.0e-75 284.6 234 60.7
Migut.I00230 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-74 283.9 235 59.1
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 1.2e-74 283.9 241 58.5
THA.LOC104810009 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 1.2e-74 283.9 241 57.3
FAN02G2859 Fragaria x ananassa HOM05D003786 ORTHO05D004375 2.0e-74 283.1 245 58.8
PGSC0003DMG401003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.6e-74 282.0 236 58.1
PGSC0003DMG402003373 Solanum tuberosum HOM05D003786 ORTHO05D004375 4.6e-74 282.0 236 58.1
ECA233G5822 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.0e-73 280.8 236 57.6
Phvul.001G137825 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 1.7e-73 280.0 238 58.4
arahy.Tifrunner.gnm1.ann1.XC8HKJ Arachis hypogaea HOM05D003786 ORTHO05D004375 2.3e-73 279.6 246 56.9
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 2.9e-73 279.3 243 58.0
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 3.9e-73 278.9 245 57.1
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 3.9e-73 278.9 245 57.1
VMungo1127G2311 Vigna mungo HOM05D003786 ORTHO05D004375 3.9e-73 278.9 239 59.0
Phvul.001G138100 Phaseolus vulgaris HOM05D003786 ORTHO05D004375 5.0e-73 278.5 235 58.7
FAN05G4299 Fragaria x ananassa HOM05D003786 ORTHO05D004375 6.6e-73 278.1 243 58.0
THA.LOC104799484 Tarenaya hassleriana HOM05D003786 ORTHO05D004375 6.6e-73 278.1 235 56.6
Psat3g070480 Pisum sativum HOM05D003786 ORTHO05D004375 8.6e-73 277.7 242 58.7
Glyma.10G072100 Glycine max HOM05D003786 ORTHO05D004375 1.1e-72 277.3 244 57.4
Lsat_1_v5_gn_6_69540 Lactuca sativa HOM05D003786 ORTHO05D004375 2.5e-72 276.2 259 55.6
Nitab4.5_0001421g0060 Nicotiana tabacum HOM05D003786 ORTHO05D004375 4.3e-72 275.4 214 63.1
SGA_v2.0_scaffold97G29166 Striga asiatica HOM05D003786 ORTHO05D004375 5.6e-72 275.0 230 55.2
GSVIVG01025123001 Vitis vinifera HOM05D003786 ORTHO05D004375 5.6e-72 275.0 234 58.1
TPR.G4813 Trifolium pratense HOM05D003786 ORTHO05D004375 1.2e-71 273.9 239 59.0
CAN.G1001.9 Capsicum annuum HOM05D003786 ORTHO05D004375 1.6e-71 273.5 237 56.5
Carub.0008s2097 Capsella rubella HOM05D003786 ORTHO05D004375 3.6e-71 272.3 235 57.4
Ca_08491_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.7e-71 271.9 240 58.3
Ca_30036_v3 Cicer arietinum L. HOM05D003786 ORTHO05D004375 4.7e-71 271.9 240 58.3
TPR.G28524 Trifolium pratense HOM05D003786 ORTHO05D004375 4.7e-71 271.9 239 59.0
Actinidia03750 Actinidia chinensis HOM05D003786 ORTHO05D004375 6.1e-71 271.6 240 56.2
Medtr7g092500 Medicago truncatula HOM05D003786 ORTHO05D004375 8.0e-71 271.2 241 56.8
Peaxi162Scf00072g00045 Petunia axillaris HOM05D003786 ORTHO05D004375 1.4e-70 270.4 235 56.6
Glyma.04G189200 Glycine max HOM05D003786 ORTHO05D004375 2.3e-70 269.6 244 56.6
Aqoxy2G03481_Aqoxy2G03482 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 8.9e-70 267.7 234 56.0
Lj1g0003252 Lotus japonicus HOM05D003786 ORTHO05D004375 8.9e-70 267.7 238 55.9
EL10Ac6g14823 Beta vulgaris HOM05D003786 ORTHO05D004375 1.5e-69 266.9 235 54.0
Ah.12g063340 Amaranthus hybridus HOM05D003786 ORTHO05D004375 3.4e-69 265.8 238 53.8
AUR62042700 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.8e-69 264.2 236 54.7
AUR62044767 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.8e-69 264.2 236 54.7
Sp6g21860 Schrenkiella parvula HOM05D003786 ORTHO05D004375 1.3e-68 263.8 235 56.2
Aa31LG5G20880 Aethionema arabicum HOM05D003786 ORTHO05D004375 1.7e-68 263.5 235 54.0
BcaB01g04647 Brassica carinata HOM05D003786 ORTHO05D004375 2.2e-68 263.1 236 55.9
HanXRQChr01g0022711 Helianthus annuus HOM05D003786 ORTHO05D004375 2.2e-68 263.1 238 56.7
AT3G45590 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 2.9e-68 262.7 235 55.7
A10p17360 Brassica napus HOM05D003786 ORTHO05D004375 6.4e-68 261.5 235 55.7
A03p11270 Brassica napus HOM05D003786 ORTHO05D004375 8.3e-68 261.2 243 54.3
BraA03t10439Z Brassica rapa HOM05D003786 ORTHO05D004375 8.3e-68 261.2 243 54.3
AT5G60230 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 1.4e-67 260.4 235 55.7
SHI14981 Sapria himalayana HOM05D003786 ORTHO05D004375 1.4e-67 260.4 226 54.4
Aqoxy6G02754 Aquilegia oxysepala HOM05D003786 ORTHO05D004375 2.4e-67 259.6 237 52.3
BraA10t43819Z Brassica rapa HOM05D003786 ORTHO05D004375 3.2e-67 259.2 236 54.7
MELO3C025739.2 Cucumis melo HOM05D003786 ORTHO05D004375 3.2e-67 259.2 203 60.6
Psat6g109040 Pisum sativum HOM05D003786 ORTHO05D004375 3.2e-67 259.2 240 55.0
Ah.08g211230 Amaranthus hybridus HOM05D003786 ORTHO05D004375 5.4e-67 258.5 238 53.4
BolC3t13758H Brassica oleracea HOM05D003786 ORTHO05D004375 5.4e-67 258.5 235 54.9
AL8G36840 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 7.0e-67 258.1 241 54.4
Migut.I00232 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.2e-66 257.3 199 62.3
Thhalv10015366m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 1.6e-66 256.9 235 55.3
Lalb_Chr25g0287531 Lupinus albus HOM05D003786 ORTHO05D004375 1.6e-66 256.9 238 55.5
RcHm_v2.0_Chr5g0061031 Rosa chinensis HOM05D003786 ORTHO05D004375 2.0e-66 256.5 224 55.8
unitig_736.g22421 Utricularia gibba HOM05D003786 ORTHO05D004375 2.7e-66 256.1 238 51.7
Carub.0005s1880 Capsella rubella HOM05D003786 ORTHO05D004375 6.0e-66 255.0 235 54.5
AUR62040193 Chenopodium quinoa HOM05D003786 ORTHO05D004375 7.8e-66 254.6 236 53.0
Oeu022264.1 Olea europaea HOM05D003786 ORTHO05D004375 7.8e-66 254.6 222 58.6
AL5G24200 Arabidopsis lyrata HOM05D003786 ORTHO05D004375 1.7e-65 253.4 237 54.4
SGA_v2.0_scaffold32G12943 Striga asiatica HOM05D003786 ORTHO05D004375 5.0e-65 251.9 235 52.8
C09p52700 Brassica napus HOM05D003786 ORTHO05D004375 1.5e-64 250.4 235 54.0
BolC9t58138H Brassica oleracea HOM05D003786 ORTHO05D004375 1.5e-64 250.4 235 54.0
HPP92_017618 Vanilla planifolia HOM05D003786 ORTHO05D004375 1.5e-64 250.4 237 53.2
Os11g0602400 Oryza sativa ssp. japonica HOM05D003786 ORTHO05D004375 2.5e-64 249.6 246 52.0
AUR62019620 Chenopodium quinoa HOM05D003786 ORTHO05D004375 9.5e-64 247.7 236 53.0
Aa31LG4G14750 Aethionema arabicum HOM05D003786 ORTHO05D004375 2.8e-63 246.1 229 51.5
Oeu012677.3 Olea europaea HOM05D003786 ORTHO05D004375 2.8e-63 246.1 233 54.9
Migut.I00240 Erythranthe guttata HOM05D003786 ORTHO05D004375 4.7e-63 245.4 200 60.0
Migut.I00250 Erythranthe guttata HOM05D003786 ORTHO05D004375 8.1e-63 244.6 235 53.6
Gorai.013G255400 Gossypium raimondii HOM05D003786 ORTHO05D004375 1.1e-62 244.2 239 52.7
PSO541G4585 Papaver somniferum HOM05D003786 ORTHO05D004375 6.8e-62 241.5 245 51.0
Gohir.D13G224600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 1.5e-61 240.4 239 51.9
Sabra09G0100500 Salix brachista HOM05D003786 ORTHO05D004375 5.8e-61 238.4 233 54.1
SEGI_12201 Sequoiadendron giganteum HOM05D003786 ORTHO05D004375 3.7e-60 235.7 258 50.0
C03p12960 Brassica napus HOM05D003786 ORTHO05D004375 4.9e-60 235.3 209 56.0
TAR623G0784 Trochodendron aralioides HOM05D003786 ORTHO05D004375 4.9e-60 235.3 169 65.7
Zm00001eb228610 Zea mays HOM05D003786 ORTHO05D004375 1.4e-59 233.8 246 50.0
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.4e-59 233.0 190 58.4
AUR62039602 Chenopodium quinoa HOM05D003786 ORTHO05D004375 4.1e-59 232.3 199 55.8
Thhalv10002801m.g Eutrema salsugineum HOM05D003786 ORTHO05D004375 7.3e-56 221.5 222 49.5
ECA238G1499 Erigeron canadensis HOM05D003786 ORTHO05D004375 1.1e-54 217.6 236 49.2
Peaxi162Scf00272g00092 Petunia axillaris HOM05D003786 ORTHO05D004375 2.6e-53 213.0 235 48.9
MD11G1124300 Malus domestica HOM05D003786 ORTHO05D004375 3.7e-52 209.1 157 63.7
PSO675G4257 Papaver somniferum HOM05D003786 ORTHO05D004375 1.4e-51 207.2 221 48.9
BcaB08g36317 Brassica carinata HOM05D003786 ORTHO05D004375 1.6e-50 203.8 235 46.8
Nitab4.5_0005175g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 2.3e-49 199.9 162 58.6
Medtr0262s0030 Medicago truncatula HOM05D003786 ORTHO05D004375 5.6e-48 195.3 183 56.3
Nitab4.5_0021870g0020 Nicotiana tabacum HOM05D003786 ORTHO05D004375 7.3e-48 194.9 154 59.7
Migut.I00236 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.2e-47 191.8 235 47.2
BolC3t13761H Brassica oleracea HOM05D003786 ORTHO05D004375 2.0e-45 186.8 161 55.3
Pp3c27_2720 Physcomitrium patens HOM05D003786 ORTHO05D004375 1.9e-43 180.3 261 39.1
Mapoly0072s0108 Marchantia polymorpha HOM05D003786 ORTHO05D004375 5.4e-43 178.7 259 38.6
ECA246G5003 Erigeron canadensis HOM05D003786 ORTHO05D004375 7.1e-43 178.3 129 64.3
Nitab4.5_0000888g0190 Nicotiana tabacum HOM05D003786 ORTHO05D004375 3.0e-41 172.9 198 49.5
VMungo0563G0001 Vigna mungo HOM05D003786 ORTHO05D004375 8.1e-39 164.9 206 45.1
Migut.I00245 Erythranthe guttata HOM05D003786 ORTHO05D004375 1.1e-38 164.5 191 47.6
Potri.014G083401 Populus trichocarpa HOM05D003786 ORTHO05D004375 7.9e-34 148.3 93 74.2
Glyma.19G143800 Glycine max HOM05D003786 ORTHO05D004375 5.6e-32 142.1 116 61.2
TAR376G1065 Trochodendron aralioides HOM05D000267 ORTHO05D004375 2.8e-31 139.8 148 48.6
CARHR150050 Cardamine hirsuta HOM05D003786 ORTHO05D004375 2.4e-30 136.7 120 60.0
Lj1g0020830 Lotus japonicus HOM05D003786 ORTHO05D004375 5.1e-25 119.0 126 46.8
Migut.I00242 Erythranthe guttata HOM05D003786 ORTHO05D004375 6.9e-22 108.6 104 51.0
Lsat_1_v5_gn_2_25281 Lactuca sativa HOM05D003786 ORTHO05D004375 9.0e-22 108.2 74 68.9
Peaxi162Scf00389g00065 Petunia axillaris HOM05D003786 ORTHO05D004375 1.3e-20 104.4 116 44.8
CBR_g44920 Chara braunii HOM05D003786 ORTHO05D004375 4.9e-20 102.4 166 33.1
SGA_v2.0_scaffold146G36226 Striga asiatica HOM05D003786 ORTHO05D004375 6.5e-20 102.1 88 51.1
Medtr5g031400 Medicago truncatula HOM05D003786 ORTHO05D004375 5.5e-19 99.0 137 43.8
Cre02.g096900 Chlamydomonas reinhardtii HOM05D003786 ORTHO05D004375 3.5e-18 96.3 190 30.5
BcaC04g19667 Brassica carinata HOM05D000666 ORTHO05D001727 6.0e-18 95.5 87 52.9
AT3G45577 Arabidopsis thaliana HOM05D003786 ORTHO05D004375 3.9e-17 92.8 94 48.9
Gohir.A13G220600 Gossypium hirsutum HOM05D003786 ORTHO05D004375 4.3e-16 89.4 90 47.8
PRCOL_00003701 Prasinoderma coloniale HOM05D003786 ORTHO05D004375 9.0e-14 81.6 170 31.2
CARHR273910 Cardamine hirsuta HOM05D003786 ORTHO05D004375 5.9e-13 79.0 78 50.0
RcHm_v2.0_Chr5g0025331 Rosa chinensis HOM05D003786 ORTHO05D004375 2.5e-11 73.6 61 55.7
MCO01G070 Micromonas commoda HOM05D003786 ORTHO05D004375 6.7e-09 65.5 97 37.1
Cfa023727 Carpinus fangiana HOM05D003786 ORTHO05D004375 4.8e-07 59.3 129 29.5
Zm00001eb022270 Zea mays HOM05D028996 ORTHO05D004375 3.1e-06 56.6 62 48.4


User provided reference genes

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