Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 1.3e-118 430.3 316 100.0
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 2.3e-78 296.6 208 81.7
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 3.3e-77 292.7 166 89.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 4.3e-77 292.4 213 73.7
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 1.4e-75 287.3 205 81.0
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.2e-74 284.3 162 89.5
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 1.5e-74 283.9 205 79.5
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 2.0e-74 283.5 216 78.2
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 2.0e-74 283.5 170 85.9
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 5.8e-74 282.0 285 72.6
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 7.6e-74 281.6 204 76.0
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 7.6e-74 281.6 209 80.4
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 9.9e-74 281.2 205 79.0
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 1.3e-73 280.8 215 78.6
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 3.8e-73 279.3 170 87.6
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 3.8e-73 279.3 170 87.1
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 6.4e-73 278.5 170 84.7
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 1.9e-72 276.9 170 84.1
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 3.2e-72 276.2 151 90.7
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 7.1e-72 275.0 175 82.3
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.1e-72 275.0 169 87.0
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 9.3e-72 274.6 152 92.1
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.6e-71 273.9 170 84.7
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 2.1e-71 273.5 165 86.7
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 3.5e-71 272.7 177 86.4
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 4.6e-71 272.3 164 87.2
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.6e-71 272.3 170 87.6
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 4.6e-71 272.3 244 66.4
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.0e-71 271.9 163 87.1
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 1.0e-70 271.2 151 92.1
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 1.0e-70 271.2 151 92.1
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 1.0e-70 271.2 222 69.8
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 1.0e-70 271.2 170 88.8
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.0e-70 271.2 151 92.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 1.0e-70 271.2 244 65.6
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 1.3e-70 270.8 226 67.3
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 1.8e-70 270.4 152 90.8
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 1.8e-70 270.4 152 90.8
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 1.8e-70 270.4 152 90.8
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 1.8e-70 270.4 219 70.3
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.8e-70 270.4 217 82.5
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-70 270.0 173 83.2
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 2.3e-70 270.0 173 83.2
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 3.0e-70 269.6 215 70.7
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 3.9e-70 269.2 152 90.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 3.9e-70 269.2 152 90.1
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 3.9e-70 269.2 175 82.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 3.9e-70 269.2 150 92.0
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 3.9e-70 269.2 206 78.6
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 3.9e-70 269.2 150 90.7
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 5.1e-70 268.9 151 91.4
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.1e-70 268.9 147 91.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 5.1e-70 268.9 176 80.7
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 6.7e-70 268.5 151 91.4
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 6.7e-70 268.5 170 83.5
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 8.7e-70 268.1 153 90.2
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 8.7e-70 268.1 152 90.1
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 8.7e-70 268.1 152 90.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 1.1e-69 267.7 152 90.1
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 1.1e-69 267.7 172 81.4
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 1.5e-69 267.3 153 90.2
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.5e-69 267.3 152 90.1
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 1.5e-69 267.3 171 81.9
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 2.5e-69 266.5 225 72.0
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 3.3e-69 266.2 152 89.5
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.3e-69 266.2 152 89.5
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 3.3e-69 266.2 151 90.1
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.3e-69 265.8 206 75.7
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 5.6e-69 265.4 164 85.4
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 5.6e-69 265.4 172 82.0
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 5.6e-69 265.4 173 82.1
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 7.4e-69 265.0 152 89.5
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 1.3e-68 264.2 208 80.8
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 1.3e-68 264.2 309 67.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.3e-68 264.2 172 82.0
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 1.6e-68 263.8 152 91.4
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 2.1e-68 263.5 154 90.3
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.8e-68 263.1 224 69.2
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 3.7e-68 262.7 221 72.9
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 4.8e-68 262.3 152 86.8
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.8e-68 262.3 219 68.5
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 1.1e-67 261.2 206 76.2
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-67 261.2 206 76.2
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.4e-67 260.8 206 75.7
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-67 260.8 151 86.8
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.4e-67 260.8 177 79.7
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.8e-67 260.4 152 89.5
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 1.8e-67 260.4 152 89.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 4.0e-67 259.2 152 87.5
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.3e-67 258.8 152 85.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 6.9e-67 258.5 147 90.5
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 9.0e-67 258.1 145 91.0
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.2e-66 257.7 210 69.0
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.2e-66 257.7 206 75.2
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 1.2e-66 257.7 291 65.3
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.5e-66 257.3 152 86.2
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.0e-66 256.9 227 66.5
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 2.0e-66 256.9 146 89.0
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 2.6e-66 256.5 167 80.8
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 3.4e-66 256.1 219 67.6
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.4e-66 256.1 205 74.1
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 5.8e-66 255.4 147 90.5
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 5.8e-66 255.4 150 88.0
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 7.6e-66 255.0 170 80.6
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 7.6e-66 255.0 291 63.2
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 7.6e-66 255.0 173 79.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 7.6e-66 255.0 153 85.6
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 7.6e-66 255.0 153 85.6
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 1.0e-65 254.6 176 77.3
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.9e-65 253.1 150 86.7
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.8e-65 252.7 151 86.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.5e-64 250.0 152 84.2
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 2.5e-64 250.0 202 74.3
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 7.1e-64 248.4 170 79.4
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.1e-63 246.9 174 77.6
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 2.7e-63 246.5 234 68.8
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.0e-63 245.4 153 82.4
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 6.0e-63 245.4 153 82.4
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 6.0e-63 245.4 163 79.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 7.9e-63 245.0 153 81.7
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.8e-62 243.8 214 76.6
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 1.1e-61 241.1 140 87.9
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 1.1e-61 241.1 151 84.1
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 1.1e-61 241.1 156 81.4
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 9.6e-61 238.0 149 84.6
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.3e-60 237.7 220 66.8
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 2.1e-60 236.9 143 85.3
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 1.8e-59 233.8 151 82.8
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 1.8e-59 233.8 165 75.2
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.5e-58 230.7 159 78.6
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 5.8e-58 228.8 141 83.0
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 7.6e-58 228.4 130 90.0
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 3.2e-56 223.0 171 72.5
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 3.9e-54 216.1 224 59.8
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 3.9e-54 216.1 224 59.8
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 5.1e-54 215.7 135 81.5
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 3.3e-53 213.0 121 90.1
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 2.2e-52 210.3 224 56.2
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 8.2e-52 208.4 127 84.3
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 5.0e-49 199.1 122 84.4
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 5.0e-49 199.1 122 84.4
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.1e-48 198.0 179 64.8
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 3.2e-48 196.4 163 70.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 5.5e-48 195.7 153 66.0
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.7e-45 185.7 109 86.2
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 1.1e-43 181.4 151 64.9
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 5.3e-43 179.1 168 60.1
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 9.1e-43 178.3 123 73.2
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 1.5e-42 177.6 171 59.6
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 2.8e-36 156.8 94 84.0
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 3.1e-35 153.3 94 81.9
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 1.7e-33 147.5 104 75.0
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 2.1e-31 140.6 153 55.6
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.1e-31 139.0 211 46.9
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 6.1e-31 139.0 211 46.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.0e-30 138.3 173 52.0
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 1.6e-26 124.4 137 54.0
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 2.2e-20 104.0 139 46.8
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 9.1e-19 98.6 53 88.7
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.8e-14 82.0 40 100.0
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.4e-13 79.7 45 84.4
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 5.7e-13 79.3 50 80.0
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.2e-12 77.4 66 65.2
EL10Ac1g00433 Beta vulgaris HOM05D004370 ORTHO05D005084 2.1e-07 60.8 67 55.2


User provided reference genes

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