Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj5A282T78 Lonicera japonica HOM05D000904 ORTHO05D006931 1.2e-254 882.9 499 100.0
CSS0030434 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D006931 1.4e-69 268.1 532 39.5
Dinv29628 Davidia involucrata HOM05D000904 ORTHO05D006931 4.6e-65 253.1 511 41.7
Actinidia26193 Actinidia chinensis HOM05D000904 ORTHO05D006931 4.4e-60 236.5 470 41.5
vmacro19831 Vaccinium macrocarpon HOM05D000904 ORTHO05D006931 7.3e-55 219.2 474 37.1
GSVIVG01023150001 Vitis vinifera HOM05D000904 ORTHO05D006931 8.1e-54 215.7 201 56.2
QL02p103277 Quercus lobata HOM05D000904 ORTHO05D006931 1.1e-53 215.3 200 58.5
Cfa004448 Carpinus fangiana HOM05D000904 ORTHO05D006931 6.8e-53 212.6 206 58.7
Haze_09988 Corylus avellana HOM05D000904 ORTHO05D006931 2.6e-52 210.7 206 58.3
Cc02_g23540 Coffea canephora HOM05D000904 ORTHO05D006931 2.4e-50 204.1 308 43.8
CiPaw.05G001900 Carya illinoinensis HOM05D000904 ORTHO05D006931 1.2e-49 201.8 204 55.9
DCAR_001720 Daucus carota HOM05D000904 ORTHO05D006931 1.6e-49 201.4 205 54.6
COL.COLO4_22855 Corchorus olitorius HOM05D000904 ORTHO05D006931 8.7e-48 195.7 202 52.5
Atru.chr3.2070 Acer truncatum HOM05D000904 ORTHO05D006931 3.6e-46 190.3 505 33.5
Prupe.1G585000 Prunus persica HOM05D000904 ORTHO05D006931 9.9e-44 182.2 201 53.2
TAR628G1213 Trochodendron aralioides HOM05D000904 ORTHO05D006931 6.4e-43 179.5 458 37.1
Nn5g27250 Nelumbo nucifera HOM05D000904 ORTHO05D006931 1.1e-42 178.7 416 36.5
Ciclev10003415m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.4e-42 178.3 179 52.0
Manes.10G111800 Manihot esculenta HOM05D000904 ORTHO05D006931 1.4e-42 178.3 419 37.0
Migut.B00725 Erythranthe guttata HOM05D000904 ORTHO05D006931 7.1e-42 176.0 341 37.5
Oeu043612.1 Olea europaea HOM05D000904 ORTHO05D006931 2.7e-41 174.1 426 35.4
Nitab4.5_0008306g0010 Nicotiana tabacum HOM05D000904 ORTHO05D006931 6.0e-41 172.9 426 34.0
Duzib160G0493 Durio zibethinus HOM05D000904 ORTHO05D006931 1.0e-40 172.2 180 51.1
SGA_v2.0_scaffold131G34405 Striga asiatica HOM05D000904 ORTHO05D006931 1.3e-40 171.8 307 41.0
Solyc01g103090.4 Solanum lycopersicum HOM05D000904 ORTHO05D006931 1.7e-40 171.4 400 34.2
Cpa.g.sc173.41 Carica papaya HOM05D000904 ORTHO05D006931 5.1e-40 169.9 181 53.0
Ciclev10024033m.g Citrus clementina HOM05D000904 ORTHO05D006931 5.1e-40 169.9 183 50.3
Glyma.08G162800 Glycine max HOM05D000904 ORTHO05D006931 8.7e-40 169.1 288 39.6
ECA240G4408 Erigeron canadensis HOM05D000904 ORTHO05D006931 2.5e-39 167.5 389 38.6
MD15G1442300 Malus domestica HOM05D000904 ORTHO05D006931 3.3e-39 167.2 391 37.6
Ciclev10010745m.g Citrus clementina HOM05D000904 ORTHO05D006931 5.6e-39 166.4 183 49.2
Medtr2g005450 Medicago truncatula HOM05D000904 ORTHO05D006931 5.6e-39 166.4 362 36.2
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 7.4e-39 166.0 218 50.0
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 7.4e-39 166.0 218 50.0
arahy.Tifrunner.gnm1.ann1.V0D4VX Arachis hypogaea HOM05D000904 ORTHO05D006931 9.6e-39 165.6 278 43.9
PGSC0003DMG400020705 Solanum tuberosum HOM05D000904 ORTHO05D006931 1.3e-38 165.2 399 34.6
VMungo0540G1910 Vigna mungo HOM05D000904 ORTHO05D006931 1.6e-38 164.9 352 38.1
Peaxi162Scf00011g01832 Petunia axillaris HOM05D000904 ORTHO05D006931 4.8e-38 163.3 444 33.8
Sed0005680 Sechium edule HOM05D000904 ORTHO05D006931 6.2e-38 162.9 432 33.8
HanXRQChr12g0381671 Helianthus annuus HOM05D000904 ORTHO05D006931 8.1e-38 162.5 380 34.5
Atru.chr6.324 Acer truncatum HOM05D000904 ORTHO05D006931 1.1e-37 162.2 326 40.2
arahy.Tifrunner.gnm1.ann1.AE80VE Arachis hypogaea HOM05D000904 ORTHO05D006931 1.1e-37 162.2 321 40.5
MBI19_g32709_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D006931 1.4e-37 161.8 116 67.2
Psat1g223160 Pisum sativum HOM05D000904 ORTHO05D006931 1.8e-37 161.4 371 35.0
Lalb_Chr20g0123821 Lupinus albus HOM05D000904 ORTHO05D006931 3.1e-37 160.6 199 49.7
ClCG10G007430 Citrullus lanatus HOM05D000904 ORTHO05D006931 6.9e-37 159.5 129 60.5
RcHm_v2.0_Chr7g0221391 Rosa chinensis HOM05D000904 ORTHO05D006931 6.9e-37 159.5 128 61.7
Eucgr.G00080 Eucalyptus grandis HOM05D000904 ORTHO05D006931 1.5e-36 158.3 202 48.0
Nitab4.5_0004668g0060 Nicotiana tabacum HOM05D000904 ORTHO05D006931 1.5e-36 158.3 432 33.3
FAN18G0255 Fragaria x ananassa HOM05D000904 ORTHO05D006931 2.0e-36 157.9 471 33.5
PSO421G0485 Papaver somniferum HOM05D000904 ORTHO05D006931 2.0e-36 157.9 135 58.5
Phvul.006G221300 Phaseolus vulgaris HOM05D000904 ORTHO05D006931 2.0e-36 157.9 261 45.6
Ca_00027_v3 Cicer arietinum L. HOM05D000904 ORTHO05D006931 3.4e-36 157.1 278 39.2
BcaNung05228 Brassica carinata HOM05D000904 ORTHO05D006931 4.5e-36 156.8 219 47.5
Sopen01g045500 Solanum pennellii HOM05D000904 ORTHO05D006931 4.5e-36 156.8 440 31.6
arahy.Tifrunner.gnm1.ann1.7BJ6UQ Arachis hypogaea HOM05D000904 ORTHO05D006931 5.8e-36 156.4 278 45.7
AT1G10320 Arabidopsis thaliana HOM05D000904 ORTHO05D006931 9.9e-36 155.6 295 39.0
Lj5g0025119 Lotus japonicus HOM05D000904 ORTHO05D006931 2.2e-35 154.5 477 31.2
Glyma.15G244700 Glycine max HOM05D000904 ORTHO05D006931 2.9e-35 154.1 112 64.3
TWI59G0191 Tripterygium wilfordii HOM05D000904 ORTHO05D006931 2.9e-35 154.1 455 33.8
FvH4_5g28020 Fragaria vesca HOM05D000904 ORTHO05D006931 4.9e-35 153.3 480 33.1
Lsat_1_v5_gn_9_121820 Lactuca sativa HOM05D000904 ORTHO05D006931 4.9e-35 153.3 202 43.6
Aa31LG1G4600 Aethionema arabicum HOM05D000904 ORTHO05D006931 3.2e-34 150.6 308 41.6
CAN.G855.47 Capsicum annuum HOM05D000904 ORTHO05D006931 3.2e-34 150.6 382 33.2
Potri.004G228600 Populus trichocarpa HOM05D000904 ORTHO05D006931 3.2e-34 150.6 507 30.0
Sc06g0007800 Simmondsia chinensis HOM05D000904 ORTHO05D006931 9.3e-34 149.1 393 31.6
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 1.2e-33 148.7 305 38.7
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.2e-33 148.7 305 38.7
RcHm_v2.0_Chr6g0272531 Rosa chinensis HOM05D000904 ORTHO05D006931 2.1e-33 147.9 278 38.5
AL1G21050 Arabidopsis lyrata HOM05D000904 ORTHO05D006931 3.5e-33 147.1 306 36.6
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 3.5e-33 147.1 305 38.0
Gohir.D02G105700 Gossypium hirsutum HOM05D000904 ORTHO05D006931 3.5e-33 147.1 351 36.8
MELO3C016469.2 Cucumis melo HOM05D000904 ORTHO05D006931 1.0e-32 145.6 429 33.3
CARHR010450 Cardamine hirsuta HOM05D000904 ORTHO05D006931 2.3e-32 144.4 334 36.2
Sp1g08920 Schrenkiella parvula HOM05D000904 ORTHO05D006931 5.1e-32 143.3 296 38.9
Thhalv10009354m.g Eutrema salsugineum HOM05D000904 ORTHO05D006931 8.7e-32 142.5 283 37.8
CANSAT01G3012 Cannabis sativa HOM05D000904 ORTHO05D006931 1.5e-31 141.7 481 31.6
HPP92_011424 Vanilla planifolia HOM05D000904 ORTHO05D006931 1.5e-31 141.7 187 44.4
Gohir.A03G081600 Gossypium hirsutum HOM05D000904 ORTHO05D006931 3.3e-31 140.6 312 36.2
PSO063G1559 Papaver somniferum HOM05D000904 ORTHO05D006931 3.3e-31 140.6 284 36.6
CsaV3_3G006640 Cucumis sativus L. HOM05D000904 ORTHO05D006931 4.3e-31 140.2 438 35.4
TPR.G2096 Trifolium pratense HOM05D000904 ORTHO05D006931 4.3e-31 140.2 449 31.8
Aqoxy6G00043 Aquilegia oxysepala HOM05D000904 ORTHO05D006931 7.4e-31 139.4 416 31.5
HPP92_011434 Vanilla planifolia HOM05D000904 ORTHO05D006931 4.8e-30 136.7 258 37.2
Os02g0557500 Oryza sativa ssp. japonica HOM05D000904 ORTHO05D006931 3.1e-29 134.0 273 38.8
ATR1089G094 Amborella trichopoda HOM05D000904 ORTHO05D006931 6.9e-29 132.9 319 33.5
THA.LOC104810192 Tarenaya hassleriana HOM05D000904 ORTHO05D006931 6.9e-29 132.9 395 32.4
Hund00892 Selenicereus undatus HOM05D000904 ORTHO05D006931 4.9e-27 126.7 412 29.4
AUR62021311 Chenopodium quinoa HOM05D000904 ORTHO05D006931 1.4e-26 125.2 424 31.6
PGR042G3242 Punica granatum HOM05D000904 ORTHO05D006931 2.5e-26 124.4 194 43.3
Gorai.005G120100 Gossypium raimondii HOM05D000904 ORTHO05D006931 1.2e-25 122.1 398 32.4
SEGI_25881 Sequoiadendron giganteum HOM05D000904 ORTHO05D006931 2.7e-25 120.9 215 37.2
Pp3c3_25240 Physcomitrium patens HOM05D000904 ORTHO05D006931 4.6e-25 120.2 102 51.0
Zm00001eb243910 Zea mays HOM05D000904 ORTHO05D006931 2.3e-24 117.9 467 33.0
AUR62043443 Chenopodium quinoa HOM05D000904 ORTHO05D006931 3.0e-24 117.5 438 30.8
AagrBONN_evm.TU.Sc2ySwM_228.1260 Anthoceros agrestis HOM05D000904 ORTHO05D006931 3.9e-24 117.1 68 64.7
Mapoly0079s0042 Marchantia polymorpha HOM05D000904 ORTHO05D006931 3.3e-23 114.0 437 29.7
MD05G1263000 Malus domestica HOM05D000904 ORTHO05D006931 5.7e-23 113.2 76 69.7
BcaC05g24900 Brassica carinata HOM05D000904 ORTHO05D006931 5.9e-20 103.2 200 36.0
Carub.0001s0973 Capsella rubella HOM05D000904 ORTHO05D006931 5.0e-19 100.1 402 30.1
A06p06970 Brassica napus HOM05D000904 ORTHO05D006931 2.5e-18 97.8 273 34.4
Ciclev10013954m.g Citrus clementina HOM05D000904 ORTHO05D006931 5.5e-18 96.7 96 49.0
Ciclev10029935m.g Citrus clementina HOM05D000904 ORTHO05D006931 2.3e-16 91.3 57 71.9
CDE05G0469 Ceratophyllum demersum HOM05D000904 ORTHO05D006931 1.1e-15 89.0 417 30.5
unitig_578.g15961 Utricularia gibba HOM05D000904 ORTHO05D006931 1.9e-15 88.2 163 37.4
AUR62033228 Chenopodium quinoa HOM05D000904 ORTHO05D006931 2.2e-14 84.7 355 29.9


User provided reference genes

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