Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 7.7e-198 693.7 381 100.0
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.1e-164 583.6 341 86.5
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 4.4e-161 571.6 380 78.2
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 4.4e-161 571.6 328 87.5
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 1.6e-158 563.1 339 84.7
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 8.1e-155 550.8 408 71.6
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 2.4e-151 539.3 342 81.3
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 3.5e-150 535.4 310 86.1
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 6.6e-149 531.2 295 88.5
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 6.6e-149 531.2 295 88.5
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 9.3e-143 510.8 341 74.8
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 1.3e-141 506.9 302 82.1
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 3.0e-141 505.8 343 75.2
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 5.6e-140 501.5 297 81.1
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 8.1e-139 497.7 333 75.7
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 4.0e-138 495.4 338 73.4
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.3e-138 495.0 296 80.7
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 9.0e-138 494.2 338 73.4
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 1.3e-136 490.3 344 72.4
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 2.5e-135 486.1 343 73.5
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 2.1e-134 483.0 322 74.8
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 2.7e-134 482.6 302 78.1
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 2.7e-134 482.6 297 79.5
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 4.6e-134 481.9 346 71.4
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 7.9e-134 481.1 294 78.6
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 1.5e-132 476.9 342 71.9
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.3e-131 473.8 306 75.8
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 2.8e-131 472.6 343 71.7
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 2.8e-131 472.6 302 76.8
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 4.8e-131 471.9 335 70.4
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 6.2e-131 471.5 392 66.8
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.1e-130 470.7 291 78.4
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 1.1e-130 470.7 302 76.8
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 1.1e-130 470.7 364 68.7
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 1.4e-130 470.3 309 75.7
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 1.4e-130 470.3 322 72.7
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.4e-130 469.5 304 77.3
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 2.4e-130 469.5 342 69.9
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.1e-130 469.2 310 75.2
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 6.9e-130 468.0 304 76.3
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 6.9e-130 468.0 291 77.7
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 6.9e-130 468.0 297 77.1
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 6.9e-130 468.0 342 71.1
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 1.2e-129 467.2 393 63.9
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 1.2e-129 467.2 295 76.9
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 2.0e-129 466.5 342 69.6
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 5.8e-129 464.9 342 70.2
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 7.6e-129 464.5 326 72.1
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 1.0e-128 464.2 342 69.6
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.2e-128 463.0 339 69.9
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.2e-128 463.0 339 69.9
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 3.8e-128 462.2 345 70.4
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 3.8e-128 462.2 344 68.3
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 4.9e-128 461.8 342 71.6
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 4.9e-128 461.8 285 78.2
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 8.4e-128 461.1 344 67.7
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 2.5e-127 459.5 331 70.4
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.2e-127 459.1 290 78.6
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 3.2e-127 459.1 344 68.3
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 3.2e-127 459.1 321 70.4
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 1.6e-126 456.8 285 77.9
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 2.7e-126 456.1 326 70.6
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 3.5e-126 455.7 341 71.0
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 1.0e-125 454.1 267 80.9
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 2.3e-125 453.0 333 66.7
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.1e-124 450.7 349 68.2
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 4.3e-124 448.7 260 83.1
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 1.6e-123 446.8 363 64.7
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 1.1e-122 444.1 326 70.9
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 1.1e-122 444.1 346 66.8
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.2e-120 436.4 364 63.7
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 2.9e-120 436.0 340 66.5
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.5e-120 434.9 343 66.2
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 2.3e-117 426.4 303 71.9
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 2.5e-116 422.9 323 64.7
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 2.5e-116 422.9 373 59.2
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 6.3e-115 418.3 260 80.8
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 6.3e-115 418.3 260 76.2
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 3.1e-114 416.0 418 54.1
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 8.5e-112 407.9 470 53.0
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.9e-111 406.8 343 62.7
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 2.5e-111 406.4 330 66.1
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 9.4e-111 404.4 338 61.5
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 2.1e-110 403.3 245 79.2
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.7e-110 402.1 339 61.4
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 3.0e-109 399.4 331 63.1
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.5e-105 387.1 358 58.7
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 7.7e-105 384.8 294 69.7
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.1e-103 380.9 322 62.1
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 1.4e-103 380.6 281 70.1
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 3.6e-102 375.9 345 59.4
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.8e-101 373.6 337 59.9
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 3.9e-101 372.5 316 63.6
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 1.1e-100 370.9 348 58.3
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 3.1e-98 362.8 266 71.8
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.1e-98 362.8 222 78.8
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 5.3e-98 362.1 222 78.4
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 2.0e-97 360.1 221 80.1
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 9.4e-95 351.3 216 78.2
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.9e-88 329.7 341 51.9
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 6.5e-88 328.6 262 67.6
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.2e-84 317.8 328 52.4
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 2.0e-84 317.0 353 48.7
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 2.3e-80 303.5 251 61.8
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.5e-79 300.8 327 47.7
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.8e-77 293.9 345 47.0
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 5.4e-74 282.3 191 73.8
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 5.6e-71 272.3 156 86.5
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.1e-66 258.1 294 46.9
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 7.3e-63 245.4 257 47.5
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.1e-55 221.5 343 44.6
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 3.4e-52 209.9 271 41.7
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 1.0e-48 198.4 113 83.2
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 1.7e-48 197.6 114 80.7
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.5e-47 194.5 351 32.8
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 8.1e-46 188.7 121 75.2
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 1.9e-34 151.0 101 75.2
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 7.1e-34 149.1 103 67.0
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 2.1e-30 137.5 77 84.4
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.4e-29 134.8 76 81.6
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 2.0e-28 131.0 91 65.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 1.1e-26 125.2 77 74.0
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.5e-23 114.8 123 60.2
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.6e-23 112.8 85 69.4
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 9.6e-23 112.1 102 57.8
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 7.6e-20 102.4 139 48.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 3.0e-16 90.5 79 58.2
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 5.1e-16 89.7 99 48.5
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 6.9e-13 79.3 54 70.4
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 9.7e-07 58.9 217 27.2
Ca_29136_v3 Cicer arietinum L. HOM05D016293 ORTHO05D018978 2.8e-06 57.4 145 25.5
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 4.8e-06 56.6 88 36.4


User provided reference genes

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