Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A191G51 Lonicera japonica HOM05D000329 ORTHO05D000833 0.0e+00 2179.1 1095 100.0
CSS0031193 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D000833 0.0e+00 1243.4 1091 59.8
Actinidia02012 Actinidia chinensis HOM05D000329 ORTHO05D000833 0.0e+00 1200.3 1086 58.3
Rhsim02G0228800 Rhododendron simsii HOM05D000329 ORTHO05D000833 0.0e+00 1170.2 1112 55.7
Actinidia14555 Actinidia chinensis HOM05D000329 ORTHO05D000833 0.0e+00 1134.0 1088 56.5
GSVIVG01019761001 Vitis vinifera HOM05D000329 ORTHO05D000833 0.0e+00 1099.0 1086 55.1
CiPaw.12G093800 Carya illinoinensis HOM05D000329 ORTHO05D000833 0.0e+00 1089.7 1090 52.9
Cfa012174 Carpinus fangiana HOM05D000329 ORTHO05D000833 7.5e-312 1073.5 1085 53.1
Cc08_g14660 Coffea canephora HOM05D000329 ORTHO05D000833 2.2e-311 1072.4 1133 50.4
Nitab4.5_0003441g0110 Nicotiana tabacum HOM05D000329 ORTHO05D000833 7.4e-310 1067.4 1083 52.2
DCAR_006743 Daucus carota HOM05D000329 ORTHO05D000833 2.8e-309 1065.4 1097 53.4
Haze_08848 Corylus avellana HOM05D000329 ORTHO05D000833 1.3e-306 1056.6 1099 51.5
HanXRQChr17g0533711 Helianthus annuus HOM05D000329 ORTHO05D000833 2.9e-306 1055.4 1085 52.0
ECA246G1250 Erigeron canadensis HOM05D000329 ORTHO05D000833 5.1e-303 1044.6 1089 51.7
Solyc08g081000.3 Solanum lycopersicum HOM05D000329 ORTHO05D000833 3.8e-298 1028.5 1081 51.0
Sopen08g029320 Solanum pennellii HOM05D000329 ORTHO05D000833 5.0e-298 1028.1 1091 50.6
Thecc.03G277900 Theobroma cacao HOM05D000329 ORTHO05D000833 2.7e-296 1022.3 1090 49.2
CAN.G774.26 Capsicum annuum HOM05D000329 ORTHO05D000833 3.0e-295 1018.8 1081 50.6
Prupe.5G099000 Prunus persica HOM05D000329 ORTHO05D000833 4.4e-294 1015.0 1081 50.0
TWI81G0989 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 1.5e-291 1006.5 1089 48.6
Peaxi162Scf00119g00838 Petunia axillaris HOM05D000329 ORTHO05D000833 5.5e-289 998.0 1084 50.3
Ciclev10018462m.g Citrus clementina HOM05D000329 ORTHO05D000833 1.2e-288 996.9 1080 49.4
MD14G1103700 Malus domestica HOM05D000329 ORTHO05D000833 1.4e-284 983.4 1091 48.8
RcHm_v2.0_Chr7g0197841 Rosa chinensis HOM05D000329 ORTHO05D000833 1.2e-283 980.3 1086 48.7
Migut.E01096 Erythranthe guttata HOM05D000329 ORTHO05D000833 3.5e-283 978.8 1080 48.4
Dinv38948 Davidia involucrata HOM05D000329 ORTHO05D000833 6.5e-282 974.5 873 59.2
Lsat_1_v5_gn_3_7360 Lactuca sativa HOM05D000329 ORTHO05D000833 1.2e-280 970.3 1083 49.6
Nn1g01495 Nelumbo nucifera HOM05D000329 ORTHO05D000833 2.7e-280 969.1 1092 48.7
COL.COLO4_34455 Corchorus olitorius HOM05D000329 ORTHO05D000833 1.0e-279 967.2 1058 48.0
Duzib068G0085 Durio zibethinus HOM05D000329 ORTHO05D000833 5.2e-279 964.9 1096 47.1
Manes.01G061050 Manihot esculenta HOM05D000329 ORTHO05D000833 3.7e-277 958.7 1082 47.9
MD06G1081900 Malus domestica HOM05D000329 ORTHO05D000833 4.8e-277 958.4 1089 49.0
MSTRG.13841 Avicennia marina HOM05D000329 ORTHO05D000833 6.3e-277 958.0 1084 47.9
Glyma.01G219800 Glycine max HOM05D000329 ORTHO05D000833 3.5e-275 952.2 1082 47.5
Sc01g0009540 Simmondsia chinensis HOM05D000329 ORTHO05D000833 7.7e-275 951.0 1094 47.8
Glyma.11G023700 Glycine max HOM05D000329 ORTHO05D000833 8.5e-274 947.6 1082 47.6
Gohir.D08G200900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 8.5e-274 947.6 1093 47.2
FvH4_5g02310 Fragaria vesca HOM05D000329 ORTHO05D000833 2.5e-273 946.0 1092 47.3
AUR62017213 Chenopodium quinoa HOM05D000329 ORTHO05D000833 2.1e-272 943.0 1091 45.8
Gohir.A08G182350 Gossypium hirsutum HOM05D000329 ORTHO05D000833 8.8e-271 937.6 1091 46.9
Oeu009171.4 Olea europaea HOM05D000329 ORTHO05D000833 2.6e-270 936.0 950 52.9
vmacro11324 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 2.8e-269 932.6 1103 49.1
FAN13G2110 Fragaria x ananassa HOM05D000329 ORTHO05D000833 8.3e-269 931.0 1100 46.6
Phvul.002G157500 Phaseolus vulgaris HOM05D000329 ORTHO05D000833 1.4e-268 930.2 1080 45.8
FAN04G0379 Fragaria x ananassa HOM05D000329 ORTHO05D000833 3.1e-268 929.1 1100 46.6
FAN08G1575 Fragaria x ananassa HOM05D000329 ORTHO05D000833 1.2e-267 927.2 1122 45.9
Sabra03G0089600 Salix brachista HOM05D000329 ORTHO05D000833 1.2e-267 927.2 1089 47.3
Gorai.004G211700 Gossypium raimondii HOM05D000329 ORTHO05D000833 1.6e-267 926.8 1119 46.0
Lalb_Chr09g0321021 Lupinus albus HOM05D000329 ORTHO05D000833 3.5e-267 925.6 1077 47.3
AUR62010670 Chenopodium quinoa HOM05D000329 ORTHO05D000833 5.9e-267 924.9 1093 45.9
EL10Ac5g13077 Beta vulgaris HOM05D000329 ORTHO05D000833 1.1e-265 920.6 1092 45.4
TPR.G6625 Trifolium pratense HOM05D000329 ORTHO05D000833 3.3e-265 919.1 1080 46.4
Eucgr.D01851 Eucalyptus grandis HOM05D000329 ORTHO05D000833 1.4e-263 913.7 1096 45.8
LjContig00312_ERROPOS870357g0009147 Lotus japonicus HOM05D000329 ORTHO05D000833 1.7e-261 906.7 1087 46.3
Medtr5g010300 Medicago truncatula HOM05D000329 ORTHO05D000833 2.9e-261 906.0 1086 46.0
Psat2g182320 Pisum sativum HOM05D000329 ORTHO05D000833 1.2e-259 900.6 1080 46.2
arahy.Tifrunner.gnm1.ann1.AJP7R9 Arachis hypogaea HOM05D000329 ORTHO05D000833 1.6e-259 900.2 1108 45.0
arahy.Tifrunner.gnm1.ann1.6V6FMV Arachis hypogaea HOM05D000329 ORTHO05D000833 5.9e-259 898.3 1108 44.9
ClCG01G002770 Citrullus lanatus HOM05D000329 ORTHO05D000833 5.9e-259 898.3 1094 44.6
VMungo1215G1167 Vigna mungo HOM05D000329 ORTHO05D000833 1.5e-257 893.6 1086 45.3
Aqoxy5G04007 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 1.9e-257 893.3 1086 45.9
FAN18G0976 Fragaria x ananassa HOM05D000329 ORTHO05D000833 4.3e-257 892.1 1092 45.8
Sed0005725 Sechium edule HOM05D000329 ORTHO05D000833 4.9e-253 878.6 1073 44.3
CsaV3_5G002860 Cucumis sativus L. HOM05D000329 ORTHO05D000833 3.5e-251 872.5 1094 43.9
PSO302G0151 Papaver somniferum HOM05D000329 ORTHO05D000833 1.6e-248 863.6 1080 44.1
Hund14803 Selenicereus undatus HOM05D000329 ORTHO05D000833 4.7e-248 862.1 1094 43.9
PSO210G7657 Papaver somniferum HOM05D000329 ORTHO05D000833 1.8e-247 860.1 1091 44.2
QL12p033243 Quercus lobata HOM05D000329 ORTHO05D000833 2.9e-245 852.8 1664 34.7
PGR031G0355 Punica granatum HOM05D000329 ORTHO05D000833 1.6e-243 847.0 1091 43.7
THA.LOC104818027 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 2.1e-240 836.6 1072 43.6
SGA_v2.0_scaffold144G35947 Striga asiatica HOM05D000329 ORTHO05D000833 3.0e-218 763.1 960 44.3
Ca_24553_v3 Cicer arietinum L. HOM05D000329 ORTHO05D000833 2.1e-211 740.3 1144 40.0
Ah.12g057000 Amaranthus hybridus HOM05D000329 ORTHO05D000833 3.5e-211 739.6 1194 38.3
ATR0680G104 Amborella trichopoda HOM05D000329 ORTHO05D000833 2.0e-206 723.8 1109 40.1
Atru.chr9.2249 Acer truncatum HOM05D000329 ORTHO05D000833 1.3e-192 677.9 669 52.3
MELO3C005670.2 Cucumis melo HOM05D000329 ORTHO05D000833 7.7e-190 668.7 1150 36.9
TAR636G0974 Trochodendron aralioides HOM05D000329 ORTHO05D000833 3.0e-186 656.8 686 52.3
MBI17_g28345_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 8.8e-186 655.2 1090 38.1
Zm00001eb229050 Zea mays HOM05D000329 ORTHO05D000833 2.2e-176 624.0 1101 35.9
CDE06G0648 Ceratophyllum demersum HOM05D000329 ORTHO05D000833 2.6e-174 617.1 876 39.8
Potri.003G126600 Populus trichocarpa HOM05D000329 ORTHO05D000833 4.2e-172 609.8 740 46.2
QL12p034051 Quercus lobata HOM05D000329 ORTHO05D000833 2.6e-161 573.9 536 53.7
SEGI_23393 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 1.7e-144 518.1 881 34.2
Nitab4.5_0010612g0010 Nicotiana tabacum HOM05D000329 ORTHO05D000833 1.1e-140 505.4 444 56.3
Atru.chr9.2239 Acer truncatum HOM05D000329 ORTHO05D000833 1.3e-125 455.3 441 52.8
PGSC0003DMG400012211 Solanum tuberosum HOM05D000329 ORTHO05D000833 4.3e-124 450.3 403 56.6
TAR636G0175 Trochodendron aralioides HOM05D000329 ORTHO05D000833 1.0e-117 429.1 396 55.8
QL12p034092 Quercus lobata HOM05D000329 ORTHO05D000833 1.1e-111 409.1 400 52.5
AT1G63490 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 2.0e-97 361.7 1092 26.6
Thhalv10023217m.g Eutrema salsugineum HOM05D000329 ORTHO05D000833 2.2e-96 358.2 1060 27.2
Aa31LG2G810 Aethionema arabicum HOM05D000329 ORTHO05D000833 2.9e-96 357.8 595 36.8
AL2G11730 Arabidopsis lyrata HOM05D000329 ORTHO05D000833 6.4e-96 356.7 1068 26.7
Carub.0002s0137 Capsella rubella HOM05D000329 ORTHO05D000833 3.2e-95 354.4 1064 26.7
C09p16350 Brassica napus HOM05D000329 ORTHO05D000833 3.0e-93 347.8 610 36.1
A09p13680 Brassica napus HOM05D000329 ORTHO05D000833 1.5e-92 345.5 610 35.2
BraA09t37021Z Brassica rapa HOM05D000329 ORTHO05D000833 1.5e-92 345.5 610 35.2
BolC9t54546H Brassica oleracea HOM05D000329 ORTHO05D000833 4.3e-92 344.0 614 36.0
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 2.4e-90 338.2 281 59.8
CARHR047880 Cardamine hirsuta HOM05D000329 ORTHO05D000833 1.2e-89 335.9 609 35.3
Mapoly0030s0125 Marchantia polymorpha HOM05D000329 ORTHO05D000833 2.1e-86 325.1 1085 26.0
AagrBONN_evm.TU.Sc2ySwM_228.1951 Anthoceros agrestis HOM05D000329 ORTHO05D000833 4.8e-83 313.9 1033 25.3
Sp2g01130 Schrenkiella parvula HOM05D000329 ORTHO05D000833 1.8e-74 285.4 435 39.3
DCAR_017358 Daucus carota HOM05D000329 ORTHO05D000833 1.7e-67 262.3 211 62.6
TAR636G3626 Trochodendron aralioides HOM05D000329 ORTHO05D000833 2.9e-56 224.9 336 42.6
Cpa.g.sc74.30 Carica papaya HOM05D000003 ORTHO05D000006 1.4e-53 216.1 360 39.2
QL12p033457 Quercus lobata HOM05D000005 ORTHO05D000012 2.6e-52 211.8 257 46.7
Cpa.g.sc74.31 Carica papaya HOM05D000329 ORTHO05D000833 2.7e-46 191.8 159 57.9
QL12p033282 Quercus lobata HOM05D000005 ORTHO05D000012 1.7e-43 182.6 236 44.5
HanXRQChr10g0304271 Helianthus annuus HOM05D000329 ORTHO05D000833 1.3e-40 172.9 187 50.8
Nitab4.5_0016308g0010 Nicotiana tabacum HOM05D000329 ORTHO05D000833 7.5e-28 130.6 520 25.2
Os06g0731600 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D000833 2.2e-27 129.0 314 30.9
Atru.chr9.2250 Acer truncatum HOM05D000329 ORTHO05D000833 1.2e-25 123.2 118 52.5
Cpa.g.sc74.32 Carica papaya HOM05D000329 ORTHO05D000833 2.5e-23 115.5 117 52.1
Eucgr.J00931 Eucalyptus grandis HOM05D000329 ORTHO05D045324 7.3e-23 114.0 241 31.5
Cre12.g514250 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D000833 8.0e-22 110.5 351 24.8
arahy.Tifrunner.gnm1.ann1.DW30WT Arachis hypogaea HOM05D000329 ORTHO05D000833 1.4e-21 109.8 109 48.6
Eucgr.J00708 Eucalyptus grandis HOM05D000329 ORTHO05D045324 4.4e-20 104.8 114 47.4
QL12p033493 Quercus lobata HOM05D000005 ORTHO05D000012 7.5e-20 104.0 111 46.8
PRCOL_00007006 Prasinoderma coloniale HOM05D000329 ORTHO05D000833 1.7e-19 102.8 305 25.2
Cpa.g.sc74.26 Carica papaya HOM05D000329 ORTHO05D000833 1.9e-18 99.4 141 41.8
CDE06G0038 Ceratophyllum demersum HOM05D000329 ORTHO05D000833 7.8e-17 94.0 117 41.9
Cpa.g.sc74.24 Carica papaya HOM05D000329 ORTHO05D000833 4.3e-15 88.2 92 47.8
MCO16G013 Micromonas commoda HOM05D000329 ORTHO05D000833 2.1e-14 85.9 151 31.1
vmacro10949 Vaccinium macrocarpon HOM05D008219 ORTHO05D009356 2.3e-13 82.4 115 49.6
QL12p033333 Quercus lobata HOM05D000329 ORTHO05D000833 9.9e-12 77.0 73 56.2
QL12p034180 Quercus lobata HOM05D000005 ORTHO05D000012 9.9e-12 77.0 92 43.5
Cpa.g.sc74.29 Carica papaya HOM05D000329 ORTHO05D120886 8.3e-11 73.9 84 45.2
Pp3c21_10520 Physcomitrium patens HOM05D000329 ORTHO05D000833 1.1e-10 73.6 119 34.5
SEGI_33192 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 1.9e-10 72.8 84 41.7
TAR636G1402 Trochodendron aralioides HOM05D000329 ORTHO05D000833 5.1e-08 64.7 56 53.6


User provided reference genes

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