Gene: Sopen08g029320

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g029320
  • Transcript Identifier Sopen08g029320.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 68671886-68696486 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g029320.1

Descriptions

  • Description transcription factor jumonji (jmjC) domain-containing protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | LOCATED IN: nucleus | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase , PLU-1-like , Zinc finger, PHD-type, conserved site , Zinc finger, PHD-type , Zinc finger, C5HC2-type , Transcription factor jumonji , Zinc finger, FYVE/PHD-type | BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0034721
ISO
PLAZA Integrative Orthologyhistone H3-K4 demethylation, trimethyl-H3-K4-specific AT1G63490
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT1G63490

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G63490

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001606 ARID DNA-binding domain
IPR011011 Zinc finger, FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
IPR003347 JmjC domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR001965 Zinc finger, PHD-type
IPR036431 ARID DNA-binding domain superfamily
IPR013637 Lysine-specific demethylase-like domain
IPR003349 JmjN domain
IPR004198 Zinc finger, C5HC2-type
Mapman id Description
12.3.3.8.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM5)