Gene: Carub.0002s0137
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0002s0137
- Transcript Identifier Carub.0002s0137.1
- Gene Type Coding gene
- Location scaffold_2 : 553510-561772 : positive
Gene Family Information
- ID HOM05D000329
- #Genes/#Species 1418/100
- Phylogenetic origin
- ID ORTHO05D000833
- #Genes/#Species 589/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0002s0137.v1.1
- pacid 39243073
- synonym Carubv10022146m.g
Descriptions
- Description PTHR10694//PTHR10694:SF8 - JUMONJI DOMAIN CONTAINING PROTEIN // LYSINE-SPECIFIC DEMETHYLASE LID
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034721 | ISO | PLAZA Integrative Orthology | histone H3-K4 demethylation, trimethyl-H3-K4-specific | AT1G63490 |
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT1G63490 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G63490 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR004198 | Zinc finger, C5HC2-type |
| IPR003349 | JmjN domain |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR013637 | Lysine-specific demethylase-like domain |
| IPR001606 | ARID DNA-binding domain |
| IPR019787 | Zinc finger, PHD-finger |
| IPR001965 | Zinc finger, PHD-type |
| IPR003347 | JmjC domain |
| IPR036431 | ARID DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 12.3.3.8.2 | Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM5) |