Gene: vmacro11324

General Information

Structural Information

Species Vaccinium macrocarpon
Gene Identifier vmacro11324
Transcript Identifier vmacro11324-RA
Gene Type Coding gene
Location chr8_Vaccinium_macrocarpon_Stevens_v1 : 31129425-31151154 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000329
#Genes/#Species 1418/100
Phylogenetic origin

ID ORTHO05D000833
#Genes/#Species 589/100
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

id vmacro11324_Vaccinium_macrocarpon_Stevens_v1

Descriptions

Short descriptions
Ortholog descriptions

Description Similar to KDM5B: Lysine-specific demethylase 5B (Gallus gallus OX=9031)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0034721	ISO	PLAZA Integrative Orthology	histone H3-K4 demethylation, trimethyl-H3-K4-specific	AT1G63490
GO:0009414	ISO	PLAZA Integrative Orthology	response to water deprivation	AT1G63490

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003677	IEA	InterPro	DNA binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT1G63490

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR003347	JmjC domain
IPR003349	JmjN domain
IPR004198	Zinc finger, C5HC2-type
IPR001606	ARID DNA-binding domain
IPR019787	Zinc finger, PHD-finger
IPR036431	ARID DNA-binding domain superfamily
IPR013637	Lysine-specific demethylase-like domain
IPR011011	Zinc finger, FYVE/PHD-type
IPR001965	Zinc finger, PHD-type

Mapman id	Description
12.3.3.8.2	Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM5)