Gene: AT1G63490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G63490
  • Transcript Identifier AT1G63490.2
  • Gene Type Coding gene
  • Location Chr1 : 23544938-23552984 : negative

Gene Family Information

  • ID HOM05D000329
  • #Genes/#Species 1418/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G63490.2
  • uniprot F4I240

Descriptions

  • Description transcription factor jumonji (jmjC) domain-containing protein
  • Computational description transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), PLU-1-like (InterPro:IPR013637), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G08620.2); Has 2288 Blast hits to 1952 proteins in 202 species: Archae - 0; Bacteria - 15; Metazoa - 1333; Fungi - 459; Plants - 289; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0009414
IMP
Gene Ontologyresponse to water deprivation2
GO:0034721
IDA
Gene Ontologyhistone H3-K4 demethylation, trimethyl-H3-K4-specific2
GO:0006338
IBA
Gene Ontologychromatin remodeling3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IPI
IEA
Gene OntologyDNA binding2
GO:0003677
IEA
InterProDNA binding
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0034647
IBA
Gene Ontologyhistone demethylase activity (H3-trimethyl-K4 specific)3
GO:0032452
IBA
Gene Ontologyhistone demethylase activity3
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus2 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003347 JmjC domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR011011 Zinc finger, FYVE/PHD-type
IPR019787 Zinc finger, PHD-finger
IPR003349 JmjN domain
IPR013637 Lysine-specific demethylase-like domain
IPR001606 ARID DNA-binding domain
IPR004198 Zinc finger, C5HC2-type
IPR036431 ARID DNA-binding domain superfamily
IPR001965 Zinc finger, PHD-type
Mapman id Description
12.3.3.8.2 Chromatin organisation.post-translational histone modification.histone lysine methylation.JmjC group histone demethylase activities.histone demethylase (KDM5)