Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1366.3 692 100.0
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1356.3 692 99.4
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1156.0 692 82.2
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1154.8 692 82.1
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1125.5 695 80.3
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1121.3 692 79.0
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1119.0 694 80.5
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1117.8 691 78.7
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1114.4 692 77.7
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1112.4 691 78.4
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1111.7 689 78.7
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1107.4 717 76.4
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1105.9 696 79.9
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1096.3 696 78.3
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1094.7 696 78.3
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1091.6 702 76.6
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1087.8 695 77.4
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1081.6 695 78.3
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1079.7 693 77.3
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 4.7e-312 1074.7 693 76.8
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 4.7e-312 1074.7 693 76.8
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 1.6e-310 1068.9 694 77.7
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 2.1e-310 1068.5 695 76.5
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 3.4e-308 1061.2 692 75.7
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 1.3e-307 1059.3 696 75.6
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 4.8e-307 1057.4 694 75.5
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 6.3e-307 1057.0 695 74.7
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 1.1e-306 1056.2 692 75.4
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 1.1e-306 1056.2 695 75.8
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 1.0e-304 1049.7 694 74.8
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.3e-304 1049.3 710 73.9
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 1.7e-304 1048.9 694 75.8
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 6.5e-304 1047.0 696 74.1
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 6.5e-304 1047.0 695 75.4
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 6.5e-304 1047.0 697 74.0
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 1.1e-303 1046.2 694 75.8
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 3.2e-303 1044.6 696 75.3
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 5.5e-303 1043.9 691 75.4
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 7.2e-303 1043.5 696 74.9
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 1.4e-301 1039.3 695 74.2
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 4.0e-301 1037.7 692 74.1
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 5.2e-301 1037.3 726 72.2
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 1.5e-300 1035.8 692 74.4
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 1.5e-300 1035.8 693 73.4
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 1.5e-300 1035.8 696 74.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 2.6e-300 1035.0 691 74.5
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 7.5e-300 1033.5 717 73.1
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 1.3e-299 1032.7 707 73.1
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 1.3e-299 1032.7 692 72.5
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 1.7e-299 1032.3 694 73.1
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.8e-298 1028.9 692 74.1
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 7.0e-298 1026.9 694 73.3
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 1.6e-297 1025.8 689 74.7
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 1.0e-296 1023.1 645 77.8
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 2.5e-295 1018.5 692 74.0
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 1.6e-294 1015.8 712 73.3
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 1.6e-294 1015.8 692 73.4
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 3.6e-294 1014.6 696 72.3
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 4.7e-294 1014.2 692 71.5
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 8.0e-294 1013.4 695 73.1
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 1.5e-292 1009.2 691 72.9
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 2.9e-291 1005.0 693 70.9
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 8.3e-291 1003.4 692 71.7
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 1.4e-290 1002.7 692 71.2
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 1.6e-289 999.2 695 72.4
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 2.7e-289 998.4 694 71.8
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 1.7e-288 995.7 661 74.1
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 2.9e-288 995.0 691 71.1
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 6.6e-288 993.8 692 70.4
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 8.6e-288 993.4 686 71.7
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 5.6e-287 990.7 694 71.5
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 1.2e-286 989.6 816 64.7
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 8.0e-286 986.9 694 71.3
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 8.0e-286 986.9 747 68.9
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 1.3e-280 969.5 692 70.1
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 1.9e-279 965.7 695 71.4
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 1.8e-277 959.1 777 64.6
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 4.9e-275 951.0 734 67.0
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 1.4e-274 949.5 701 67.2
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 7.8e-273 943.7 693 67.7
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 8.6e-272 940.3 694 67.9
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 1.9e-271 939.1 693 67.5
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 3.3e-271 938.3 693 67.4
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 7.3e-271 937.2 693 67.8
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 1.6e-270 936.0 692 68.9
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 2.1e-270 935.6 693 67.2
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 6.2e-270 934.1 693 67.1
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 6.2e-270 934.1 693 67.0
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 1.8e-269 932.6 693 67.1
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 4.0e-269 931.4 690 67.5
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 4.4e-268 927.9 691 67.9
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 7.1e-266 920.6 740 63.9
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 7.8e-265 917.1 624 73.4
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 3.6e-262 908.3 701 65.5
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 2.9e-259 898.7 616 73.7
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 2.4e-258 895.6 694 65.0
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 2.8e-254 882.1 697 62.7
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 9.0e-245 850.5 720 62.9
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.3e-231 805.4 581 71.4
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.1e-221 772.3 555 68.8
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 2.5e-215 752.7 494 76.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 1.3e-211 740.3 483 75.8
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.3e-211 740.3 708 53.0
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.0e-208 730.7 704 53.4
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 6.5e-203 711.4 705 51.3
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 5.7e-199 698.4 697 53.5
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 1.2e-180 637.5 503 62.6
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 6.1e-177 625.2 441 69.4
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 1.2e-175 620.9 700 44.3
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 4.4e-167 592.4 790 42.5
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.1e-136 490.0 407 61.4
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 5.1e-123 446.0 354 65.0
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 8.2e-113 412.1 694 38.9
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 3.0e-99 367.1 313 58.8
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.0e-91 342.0 213 75.1
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 5.7e-90 336.3 389 51.4
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 3.3e-82 310.5 163 87.7
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 4.5e-63 246.9 159 74.2
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 5.4e-56 223.4 389 33.4
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 1.9e-53 214.9 156 69.9
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 1.4e-43 182.2 496 27.8
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 9.2e-32 142.9 94 68.1
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 8.7e-30 136.3 319 30.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.4e-26 124.4 108 57.4
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 3.5e-23 114.4 323 24.8
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.0e-18 98.6 132 39.4
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 2.6e-18 98.2 89 51.7
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 4.2e-16 90.9 42 92.9
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 3.4e-10 71.2 78 51.3
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.7e-07 61.6 70 44.3
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.3e-06 58.5 41 70.7
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 3.9e-06 57.8 49 59.2


User provided reference genes

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