Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hma1.2p1_0151F.1_g067170 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1711.4 859 100.0
CSS0000494 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1453.3 860 82.6
GSVIVG01037230001 Vitis vinifera HOM05D005600 ORTHO05D006682 0.0e+00 1417.5 863 80.9
Actinidia35417 Actinidia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1410.2 862 80.9
CSS0013631 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1409.4 860 80.9
Dinv19587 Davidia involucrata HOM05D005600 ORTHO05D006682 0.0e+00 1400.6 864 80.8
Cc05_g16390 Coffea canephora HOM05D005600 ORTHO05D006682 0.0e+00 1397.1 860 78.0
CAN.G492.77 Capsicum annuum HOM05D005600 ORTHO05D006682 0.0e+00 1394.4 860 78.6
QL01p017999 Quercus lobata HOM05D005600 ORTHO05D006682 0.0e+00 1387.9 862 79.6
Sopen10g001510 Solanum pennellii HOM05D005600 ORTHO05D006682 0.0e+00 1384.0 859 77.6
Solyc10g005530.3 Solanum lycopersicum HOM05D005600 ORTHO05D006682 0.0e+00 1379.8 859 77.5
Ciclev10014237m.g Citrus clementina HOM05D005600 ORTHO05D006682 0.0e+00 1379.0 864 78.4
Atru.chr10.6 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1376.7 860 78.3
Atru.chr10.100 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 860 77.9
Atru.chr10.118 Acer truncatum HOM05D005600 ORTHO05D006682 0.0e+00 1373.6 860 77.9
TAR626G1503 Trochodendron aralioides HOM05D005600 ORTHO05D006682 0.0e+00 1371.3 870 77.9
vmacro09771 Vaccinium macrocarpon HOM05D005600 ORTHO05D006682 0.0e+00 1364.0 926 73.5
Hma1.2p1_0151F.1_g067180 Hydrangea macrophylla HOM05D005600 ORTHO05D006682 0.0e+00 1357.8 692 99.4
CiPaw.13G153300 Carya illinoinensis HOM05D005600 ORTHO05D006682 0.0e+00 1353.6 864 77.2
RcHm_v2.0_Chr5g0051141 Rosa chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1352.8 859 76.6
Prupe.4G257300 Prunus persica HOM05D005600 ORTHO05D006682 0.0e+00 1347.4 863 77.2
Thecc.09G241700 Theobroma cacao HOM05D005600 ORTHO05D006682 0.0e+00 1343.9 863 76.7
FvH4_3g28270 Fragaria vesca HOM05D005600 ORTHO05D006682 0.0e+00 1343.2 859 76.1
Manes.06G161000 Manihot esculenta HOM05D005600 ORTHO05D006682 0.0e+00 1340.1 863 77.4
Cfa009829 Carpinus fangiana HOM05D005600 ORTHO05D006682 0.0e+00 1337.4 859 77.1
MD03G1169700 Malus domestica HOM05D005600 ORTHO05D006682 0.0e+00 1335.1 862 76.1
Rhsim04G0002900 Rhododendron simsii HOM05D005600 ORTHO05D006682 0.0e+00 1333.9 1004 68.5
Potri.009G049200 Populus trichocarpa HOM05D005600 ORTHO05D006682 0.0e+00 1332.8 863 76.5
Lalb_Chr22g0359901 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1331.6 862 75.4
Haze_23192 Corylus avellana HOM05D005600 ORTHO05D006682 0.0e+00 1328.5 885 75.1
FAN16G1158 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1324.3 878 74.6
MSTRG.23390 Avicennia marina HOM05D005600 ORTHO05D006682 0.0e+00 1322.0 859 75.7
PSO832G1901 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1322.0 860 75.8
PGR102G0248 Punica granatum HOM05D005600 ORTHO05D006682 0.0e+00 1322.0 865 75.3
PSO210G6637 Papaver somniferum HOM05D005600 ORTHO05D006682 0.0e+00 1320.8 860 75.9
FAN11G1201 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1319.3 893 73.2
Gorai.013G252000 Gossypium raimondii HOM05D005600 ORTHO05D006682 0.0e+00 1318.9 864 75.5
Gohir.A13G217400 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 864 75.7
Lj1g0020466 Lotus japonicus HOM05D005600 ORTHO05D006682 0.0e+00 1318.5 862 74.9
Cpa.g.sc84.9 Carica papaya HOM05D005600 ORTHO05D006682 0.0e+00 1317.4 863 75.7
Glyma.16G049600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1311.6 861 74.2
Gohir.D13G221000 Gossypium hirsutum HOM05D005600 ORTHO05D006682 0.0e+00 1311.2 864 75.2
FAN21G1558 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1310.0 859 75.0
TPR.G17475 Trifolium pratense HOM05D005600 ORTHO05D006682 0.0e+00 1307.4 861 74.0
HanXRQChr11g0335621 Helianthus annuus HOM05D005600 ORTHO05D006682 0.0e+00 1305.8 855 75.2
DCAR_009654 Daucus carota HOM05D005600 ORTHO05D006682 0.0e+00 1305.4 875 73.8
Phvul.001G086100 Phaseolus vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1297.7 860 72.6
Migut.M01525 Erythranthe guttata HOM05D005600 ORTHO05D006682 0.0e+00 1293.1 860 74.3
Medtr7g083840 Medicago truncatula HOM05D005600 ORTHO05D006682 0.0e+00 1292.7 862 73.3
FAN25G1678 Fragaria x ananassa HOM05D005600 ORTHO05D006682 0.0e+00 1290.8 858 73.9
Nn3g21398 Nelumbo nucifera HOM05D005600 ORTHO05D006682 0.0e+00 1290.0 862 73.8
Nitab4.5_0003777g0050 Nicotiana tabacum HOM05D005600 ORTHO05D006682 0.0e+00 1287.7 870 73.4
Aqoxy5G00694 Aquilegia oxysepala HOM05D005600 ORTHO05D006682 0.0e+00 1286.9 860 73.5
TWI39G0768 Tripterygium wilfordii HOM05D005600 ORTHO05D006682 0.0e+00 1285.8 860 74.3
Peaxi162Scf00666g00008 Petunia axillaris HOM05D005600 ORTHO05D006682 0.0e+00 1281.5 861 74.1
Sed0013981 Sechium edule HOM05D005600 ORTHO05D006682 0.0e+00 1281.5 863 72.5
Oeu027716.3 Olea europaea HOM05D005600 ORTHO05D006682 0.0e+00 1280.4 914 71.2
Lalb_Chr14g0364031 Lupinus albus HOM05D005600 ORTHO05D006682 0.0e+00 1279.6 836 75.0
MELO3C015158.2 Cucumis melo HOM05D005600 ORTHO05D006682 0.0e+00 1273.5 862 73.1
Glyma.19G101600 Glycine max HOM05D005600 ORTHO05D006682 0.0e+00 1272.3 861 71.7
CANSAT54G1315 Cannabis sativa HOM05D005600 ORTHO05D006682 0.0e+00 1270.0 829 75.3
THA.LOC104800443 Tarenaya hassleriana HOM05D005600 ORTHO05D006682 0.0e+00 1269.6 860 71.9
Psat3g093920 Pisum sativum HOM05D005600 ORTHO05D006682 0.0e+00 1267.7 862 72.4
ECA236G4915 Erigeron canadensis HOM05D005600 ORTHO05D006682 0.0e+00 1265.8 855 71.9
AUR62010954 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1259.2 860 71.4
AUR62021465 Chenopodium quinoa HOM05D005600 ORTHO05D006682 0.0e+00 1258.8 860 71.0
CSS0009005 Camellia sinensis var. sinensis HOM05D005600 ORTHO05D006682 0.0e+00 1257.7 890 72.6
CsaV3_1G043080 Cucumis sativus L. HOM05D005600 ORTHO05D006682 0.0e+00 1255.7 862 72.0
EL10Ac2g02904 Beta vulgaris HOM05D005600 ORTHO05D006682 0.0e+00 1255.4 860 71.0
arahy.Tifrunner.gnm1.ann1.ZCX2T9 Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1255.0 862 72.0
Ah.14g082360 Amaranthus hybridus HOM05D005600 ORTHO05D006682 0.0e+00 1252.7 860 71.4
arahy.Tifrunner.gnm1.ann1.VD4ZCS Arachis hypogaea HOM05D005600 ORTHO05D006682 0.0e+00 1251.1 862 71.9
Lsat_1_v5_gn_7_110720 Lactuca sativa HOM05D005600 ORTHO05D006682 0.0e+00 1250.7 862 71.6
SGA_v2.0_scaffold7G03609 Striga asiatica HOM05D005600 ORTHO05D006682 0.0e+00 1239.6 945 66.8
CARHR104840 Cardamine hirsuta HOM05D005600 ORTHO05D006682 0.0e+00 1214.9 860 69.2
BcaB08g34531 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1211.8 860 69.1
BraA03t13632Z Brassica rapa HOM05D005600 ORTHO05D006682 0.0e+00 1210.3 860 69.0
Duzib168G1213 Durio zibethinus HOM05D005600 ORTHO05D006682 0.0e+00 1209.5 860 70.5
unitig_37.g12201 Utricularia gibba HOM05D005600 ORTHO05D006682 0.0e+00 1209.1 869 68.1
C03p55830 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1208.4 860 68.8
BolC3t17864H Brassica oleracea HOM05D005600 ORTHO05D006682 0.0e+00 1206.8 860 68.7
Carub.0003s2803 Capsella rubella HOM05D005600 ORTHO05D006682 0.0e+00 1205.7 860 68.8
BcaC01g03123 Brassica carinata HOM05D005600 ORTHO05D006682 0.0e+00 1205.3 860 68.7
AT2G13540 Arabidopsis thaliana HOM05D005600 ORTHO05D006682 0.0e+00 1204.1 861 68.8
A03p44950 Brassica napus HOM05D005600 ORTHO05D006682 0.0e+00 1203.7 857 69.2
Thhalv10022549m.g Eutrema salsugineum HOM05D005600 ORTHO05D006682 0.0e+00 1198.3 860 68.3
ATR0618G105 Amborella trichopoda HOM05D005600 ORTHO05D006682 0.0e+00 1191.8 858 68.5
AL3G45350 Arabidopsis lyrata HOM05D005600 ORTHO05D006682 0.0e+00 1183.3 907 65.4
Sc24g0002960 Simmondsia chinensis HOM05D005600 ORTHO05D006682 0.0e+00 1177.9 784 73.9
Aa31sc869G10 Aethionema arabicum HOM05D005600 ORTHO05D006682 0.0e+00 1177.2 868 67.2
Sp3g26950 Schrenkiella parvula HOM05D005600 ORTHO05D006682 0.0e+00 1165.2 861 66.8
SalBow8G4663 Salvia bowleyana HOM05D005600 ORTHO05D006682 0.0e+00 1139.4 888 66.1
Os03g0347200 Oryza sativa ssp. japonica HOM05D005600 ORTHO05D006682 0.0e+00 1112.4 864 62.8
Sabra09G0035700 Salix brachista HOM05D005600 ORTHO05D006682 0.0e+00 1099.7 940 63.1
COL.COLO4_36487 Corchorus olitorius HOM05D005600 ORTHO05D006682 2.0e-310 1068.9 751 72.6
Ca_08130_v3 Cicer arietinum L. HOM05D005600 ORTHO05D006682 1.6e-304 1049.3 790 68.4
MD11G1186900 Malus domestica HOM05D005600 ORTHO05D006682 4.5e-294 1014.6 645 77.5
Pp3c6_18600 Physcomitrium patens HOM05D005600 ORTHO05D006682 4.1e-279 964.9 877 54.2
Pp3c5_6600 Physcomitrium patens HOM05D005600 ORTHO05D006682 1.1e-276 956.8 872 54.2
Mapoly0005s0051 Marchantia polymorpha HOM05D005600 ORTHO05D006682 1.1e-271 940.3 872 53.7
ClCG03G012970 Citrullus lanatus HOM05D005600 ORTHO05D006682 5.3e-263 911.4 623 72.9
SMO236G0107 Selaginella moellendorffii HOM05D005600 ORTHO05D006682 9.1e-239 830.9 868 47.2
CDE01G0031 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 1.2e-230 803.9 875 50.1
Lj2A14G43 Lonicera japonica HOM05D005600 ORTHO05D006682 3.9e-229 798.9 581 71.3
HPP92_006936 Vanilla planifolia HOM05D005600 ORTHO05D006682 3.0e-221 772.7 555 69.0
Eucgr.B03713 Eucalyptus grandis HOM05D005600 ORTHO05D006682 3.9e-213 745.7 494 76.7
CBR_g4015 Chara braunii HOM05D005600 ORTHO05D006682 1.6e-211 740.3 958 42.9
Nitab4.5_0008957g0040 Nicotiana tabacum HOM05D005600 ORTHO05D006682 4.7e-211 738.8 483 75.4
C09p12340 Brassica napus HOM05D005600 ORTHO05D006682 1.2e-185 654.4 845 45.3
Zm00001eb016670 Zea mays HOM05D005600 ORTHO05D006682 7.4e-180 635.2 503 62.8
MD11G1196400 Malus domestica HOM05D005600 ORTHO05D006682 1.5e-177 627.5 381 77.4
VMungo1383G0719 Vigna mungo HOM05D005600 ORTHO05D006682 4.9e-176 622.5 441 69.6
SHI27472 Sapria himalayana HOM05D005600 ORTHO05D006682 4.3e-172 609.4 481 61.1
Eucgr.B03714 Eucalyptus grandis HOM05D005600 ORTHO05D006682 1.0e-144 518.5 327 76.5
BcaC04g23081 Brassica carinata HOM05D005600 ORTHO05D006682 3.7e-139 500.0 614 47.4
SEGI_34765 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 3.8e-136 490.0 407 61.4
BolC9t54127H Brassica oleracea HOM05D005600 ORTHO05D006682 7.1e-90 336.3 389 51.4
ClCG03G012990 Citrullus lanatus HOM05D005600 ORTHO05D006682 4.0e-85 320.5 215 71.2
CDE10G0769 Ceratophyllum demersum HOM05D005600 ORTHO05D006682 4.2e-82 310.5 163 87.7
PRCOL_00004432 Prasinoderma coloniale HOM05D005600 ORTHO05D006682 1.9e-74 285.0 678 29.8
MCO11G503 Micromonas commoda HOM05D005600 ORTHO05D006682 9.3e-66 256.1 651 28.4
Lj2A14T50 Lonicera japonica HOM05D005600 ORTHO05D006682 2.4e-53 214.9 156 69.2
Cre12.g524100 Chlamydomonas reinhardtii HOM05D005600 ORTHO05D006682 6.7e-40 170.2 532 27.1
SEGI_17739 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.9e-35 154.8 126 59.5
Atru.chr3.1844 Acer truncatum HOM05D005600 ORTHO05D006682 2.7e-33 148.3 97 70.1
VMungo1383G3426 Vigna mungo HOM05D000002 ORTHO05D000001 8.8e-32 143.3 155 46.5
SEGI_12823 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 1.1e-31 142.9 94 68.1
Sabra09G0035600 Salix brachista HOM05D005600 ORTHO05D006682 3.3e-31 141.4 127 55.1
Cfa024653 Carpinus fangiana HOM05D005600 ORTHO05D006682 4.8e-30 137.5 647 20.7
MBI19_g44409_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 1.8e-24 119.0 108 57.4
SEGI_14354 Sequoiadendron giganteum HOM05D005600 ORTHO05D006682 2.5e-18 98.6 131 40.5
A09p10400 Brassica napus HOM05D005600 ORTHO05D006682 7.2e-18 97.1 88 51.1
VMungo1383G0187 Vigna mungo HOM05D005600 ORTHO05D006682 5.2e-16 90.9 42 92.9
MBI19_g44872_MAGBIO Magnolia biondii HOM05D005600 ORTHO05D006682 9.5e-10 70.1 77 51.9
QL10p024418 Quercus lobata HOM05D005600 ORTHO05D006682 4.4e-07 61.2 52 57.7
Hund17892 Selenicereus undatus HOM05D026955 ORTHO05D006682 2.8e-06 58.5 41 70.7


User provided reference genes

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